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zeynep's profile
zeynep tufekci
zeynep tufekci
zeynep tufekci
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@zeynep

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zeynep tufekciVerified account

@zeynep

Complex systems, wicked problems. Society, technology, science and more. @UNC professor. @NYTimes columnist. My newsletter is @insight: http://www.theinsight.org 

floating in a most peculiar way
theinsight.org
Joined August 2009

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    1. Bloom Lab‏ @jbloom_lab 22 Jun 2021

      Bloom Lab Retweeted Bloom Lab

      A short addendum to my pre-print on early Wuhan #SARSCoV2 sequences deleted from the Sequence Read Archive (https://twitter.com/jbloom_lab/status/1407445604029009923 …), courtesy of an anonymous Twitter user. (1/n)

      Bloom Lab added,

      Bloom Lab @jbloom_lab
      In a new study, I identify and recover a deleted set of #SARSCoV2 sequences that provide additional information about viruses from the early Wuhan outbreak: https://www.biorxiv.org/content/10.1101/2021.06.18.449051v1 … (1/n)
      Show this thread
      20 replies 161 retweets 356 likes
      Show this thread
    2. Bloom Lab‏ @jbloom_lab 22 Jun 2021

      It turns out that mention of the sequencing project in question (PRJNA612766) also disappeared from China National GeneBank (CNGB) shortly after it was removed from the NIH Sequence Read Archive. (2/n)

      10 replies 89 retweets 301 likes
      Show this thread
    3. Bloom Lab‏ @jbloom_lab 22 Jun 2021

      On June-19-2020: https://web.archive.org/web/20200619042751/https://db.cngb.org/datamart/disease/DATAdis19/ … (3/n)pic.twitter.com/yK27bNd73M

      1 reply 25 retweets 107 likes
      Show this thread
    4. Bloom Lab‏ @jbloom_lab 22 Jun 2021

      On July-3-2020: https://web.archive.org/web/20200703063112/https://db.cngb.org/datamart/disease/DATAdis19/ … (4/n)pic.twitter.com/FshZanHN6J

      5 replies 25 retweets 103 likes
      Show this thread
    5. zeynep tufekci‏Verified account @zeynep 22 Jun 2021
      Replying to @jbloom_lab

      If those are your dates, they may have disappeared shortly after the related paper went online. Revision submitted 27 May, goes online 24th of June 2020, stuff gets deleted shortly after. Plausible: paper published, someone noticed, ???, moved to delete. https://onlinelibrary.wiley.com/doi/full/10.1002/smll.202002169 …pic.twitter.com/PfUsDYDXrl

      2 replies 1 retweet 12 likes
    6. Trevor Bedford‏Verified account @trvrb 23 Jun 2021
      Replying to @zeynep @jbloom_lab

      It would help to clarify to know the date of the request to NCBI for SRA deletion.

      2 replies 0 retweets 12 likes
    7. Virginia Hughes‏Verified account @virginiahughes 23 Jun 2021
      Replying to @trvrb @zeynep @jbloom_lab

      NIH told @carlzimmer: “These SARS-CoV-2 sequences were submitted for posting in SRA in March 2020 and subsequently requested to be withdrawn by the submitting investigator in June 2020"

      2 replies 1 retweet 2 likes
      zeynep tufekci‏Verified account @zeynep 23 Jun 2021
      Replying to @virginiahughes @trvrb and

      Interesting! So deletion request definitely came after submission, at least and possibly after publication. Fits a scenario where scientists submit in good faith and then someone notices and overrides. (Retractions get noted, preprint couldn’t be withdrawn—archive doesn’t allow).

      7:26 PM - 23 Jun 2021
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      0 replies 0 retweets 3 likes

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