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Valentine Svensson proslijedio/la je Tweet
ZipSeq: Barcoding for Real-time Mapping of Single Cell Transcriptomes. Using ZipSeq, they mapped gene expression in 3 settings: in-vitro wound healing, live lymph node sections & in a live tumor microenvironment (TME) Ref: http://bit.ly/37ZNrN4
#singlecell#ZipSeq#scRNAseqpic.twitter.com/WrNzpDyoqY
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Valentine Svensson proslijedio/la je Tweet
We're excited to release a
#scanpy update for the analysis and visualization of#spatialTranscriptomics data, focussing on@10xGenomics Visium and MERFISH, thx@g_palla1. Tutorial at https://nbviewer.jupyter.org/github/theislab/scanpy-tutorials/blob/master/analysis-visualization-spatial.ipynb … Support for different data types and integration with#scRNAseq soon!pic.twitter.com/SC6sYldpED
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If you do data science and use AWS, how do you keep data? CSV files on S3 or in DBaaS? If in a DB, which one? Redshift, DynamoDB, or DocumentDB?
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My favorite thing about using Julia is constantly finding packages I hadn't seen before. I don't use them, but it's fun to see new things. In Python and R I feel like I've seen everything interesting. It's like going on a trip to a new country.
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Valentine Svensson proslijedio/la je Tweet
Delighted to share our work on CD44
@NatureComms! Great work by@morgan_oatley,@ozgevargel & the rest of the team. Excellent collaboration with Sarah Teichmann,@vallens &@kiran_r_patil.@embl,@sangerinstitute#stemcells#metabolism#scRNAseqhttps://www.nature.com/articles/s41467-019-14171-5 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
I like these! Not often you see genuinely new visualisations.https://twitter.com/GaelVaroquaux/status/1221936843949666304 …
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Valentine Svensson proslijedio/la je Tweet
"Droplet scRNA-seq is not zero-inflated"
@vallens blog>preprint>publication highlights key aspect of scRNA-seq data https://www.nature.com/articles/s41587-019-0379-5 … Other great work on statistical models in scRNA-seq from@rafalab and@sandakano: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1861-6 …#singlecellgenomicsdayHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Uses kb-python for the first time last week, really great usability! I'm also running CellRanger, at least for this data, to make sure nothing is weird. A week later I'm still running CellRanger. Something similar to the CellRanger report is needed though, people expect to see ithttps://twitter.com/lioscro/status/1192486027509678080 …
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Valentine Svensson proslijedio/la je Tweet
how to ask nat comms to allow me to give them $6000
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Valentine Svensson proslijedio/la je Tweet
It is sufficient to model errors as homoscedastic normal in order to motivate the least squares estimator, but it is not necessary.
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Valentine Svensson proslijedio/la je Tweet
This is really great work
@vallens, congrats! Your next blog post should be "Droplet scRNA-seq is not normal/lognormally distributed" (looking at you PCA/FA)...https://twitter.com/vallens/status/1217119345962254338 …
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Valentine Svensson proslijedio/la je Tweet
これはimputationはやっちゃダメってやつだっけ?ブログ→プレプリント→専門誌って流れ、ナウな感じすごいhttps://twitter.com/vallens/status/1217119345962254338 …
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Valentine Svensson proslijedio/la je Tweet
Great paper and analysis by
@vallens with important implications for scRNA analysis, especially re imputation (is it necessary?)https://twitter.com/vallens/status/1217119345962254338 …
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Valentine Svensson proslijedio/la je Tweet
Droplet scRNA-seq is not zero-inflated https://go.nature.com/385wIr9 pic.twitter.com/ahpA7do9fo
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My blog post from 2017 which I converted to a bioRxiv pre-print last year has now been peer reviewed and published in Nature Biotechnology
@NatureBiotech: https://www.nature.com/articles/s41587-019-0379-5 … "Droplet scRNA-seq is not zero-inflated"pic.twitter.com/gLe9J0uczP
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For data science / analysis in industry, what are common ways to store and archive analyses? (Which is a collection of random scripts, small data snapshots, and of course reports with results).
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Valentine Svensson proslijedio/la je Tweet
Spooky dev environment hack: add 127.0.0.1 xn--9q8h to /etc/hosts and then all your dev servers can be accessed at http://
It's localghost!Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Valentine Svensson proslijedio/la je Tweet
Also, it does not make sense to discuss reproducibility not taking into account these layershttps://twitter.com/luispedrocoelho/status/1214888985132224514 …
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Valentine Svensson proslijedio/la je Tweet
Very happy to present our Comment for
@naturemethods Method of the Year 2019: single-cell multimodal analysishttps://twitter.com/naturemethods/status/1214225957378306048 …
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