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Uwe Schmidt proslijedio/la je Tweet
Good to hear that its helpful for you! :) As for batch processing, here's a small jython script that runs stardist on all files in a folder: https://gist.github.com/maweigert/8dd6ef139e1cd37b2307b35fb50dee4a …
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Uwe Schmidt proslijedio/la je Tweet
@uschmidt83 rounding off the day with Stardist as a Fiji plugin.#EMBLDeepLearning#BioImageAnalysispic.twitter.com/rwkXk7DWkB
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Uwe Schmidt proslijedio/la je Tweet
Day 2 in Heidelberg:
@martweig talks about image restoration with neural networks.#EMBLDeepLearning#DeepLearning#BioImageAnalysispic.twitter.com/AyYksGBmk0
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Uwe Schmidt proslijedio/la je Tweet
Thanks to the heroic efforts of
@uschmidt83 there is now a Fiji plugin of StarDist that allows to apply trained models! Check it out at https://imagej.net/StarDist@ChiguireKun@romainGuiet@frauzufall@FijiSc#WeAreStarDist https://twitter.com/uschmidt83/status/1215604241034809346 …pic.twitter.com/SgHWoheoB6Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
We released a
#StarDist plugin for@FijiSc!
https://imagej.net/StarDist
It ships with a versatile model that we found to work well for segmenting cell nuclei in a variety of challenging (2D) fluorescence microscopy images.
#WeAreStarDistpic.twitter.com/bu4IUb5jyn
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Uwe Schmidt proslijedio/la je Tweet
“I’ll Finish it in the Hotel Room after Arriving at the Conference the Night Before: An Autoethnographic Interrogation of Procrastination and Spectacular Time Misestimation in the Academy”
#OverlyHonestPaperTitlesHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Uwe Schmidt proslijedio/la je Tweet
GPU accelerated image processing in FIJI, out now! https://www.nature.com/articles/s41592-019-0650-1 … congrats to
@haesleinhuepf and@loicaroyer!https://twitter.com/haesleinhuepf/status/1196468240274350080 …
1:26Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Uwe Schmidt proslijedio/la je Tweet
#GPUacceleration is changing the way we do#BioImageAnalysis. E.g. tuning parameters of workflows becomes a completely different experience with instant feedback. We're happy and#soproud to share it#opensource with everyone! Today out in@naturemethods:#clij
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Uwe Schmidt proslijedio/la je Tweet
This is some advice I had shared with my lab on how to shorten your paper to fit the page limit. With the
#CVPR20 deadline coming up, I thought I'd share it widely.https://medium.com/@deviparikh/shortening-papers-to-fit-page-limits-97601318681d …Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Uwe Schmidt proslijedio/la je Tweet
My wonderful friend Eloise has just launched Emmeline Education, a company that runs workshops on gender, equality, and diversity. Visit their website here
https://www.emmelineeducation.com/
Please RT and spread the word 

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Uwe Schmidt proslijedio/la je Tweet
Anybody else do the thing where you put off a small task for a few days, and then a few more days, and then just a few more until it suddenly becomes the *thing* on your to-do list that you're afraid of for like 3 months until you take the 20 minutes to do it? Or is that just me
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Uwe Schmidt proslijedio/la je Tweet
I'm over the moon to officially announce
#napari, a fast n-dimensional array viewer in Python! With@loicaroyer,@kne42, and especially@sofroniewn, and many others! https://ilovesymposia.com/2019/10/24/introducing-napari-a-fast-n-dimensional-image-viewer-in-python/ …pic.twitter.com/7RkMaJHdo3Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Uwe Schmidt proslijedio/la je Tweet
Spontaneous
#applause
and tons of questions
when @uschmidt83 shows results of dense cell segmentation using#WeAreStarDist (slides from@martweig)#NEUBIAS#TS13 https://github.com/mpicbg-csbd/stardist …pic.twitter.com/4A3rAgF8xV
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Uwe Schmidt proslijedio/la je Tweet
Introducing to
#BioImageAnalysis with#python and#scikitimage in just 90 minutes:@uschmidt83 in full swing
https://github.com/uschmidt83/neubias-ts13 …
#OpenTeaching#NEUBIAS#TS13pic.twitter.com/FnDFgveRco
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Uwe Schmidt proslijedio/la je Tweet
"Do it yourself" publishing has been LIBERATING. You don't notice how "traditional" publishing warps your approach to science until you leave it behind. Arguably the biggest advantage: I can focus on "how can I advance my field?", rather than "how can I get into a good journal?"
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Uwe Schmidt proslijedio/la je Tweet
I've got a literally life and death one. 5G cell networks are going to set back weather forecasting ~30 yrs bc they operate at frequencies too near that of water vapor in the atmosphere, harming measurements. We'll lose 2-3 days' worth of accuracy in hurricane path forecasting. https://twitter.com/girlziplocked/status/1166536325517979648 …
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Uwe Schmidt proslijedio/la je Tweet
A hypothetical So you walk to work each day. One day you come upon someone having trouble changing a tire. You think "I know how to change a tire, and it will only make me a little late for work" so you stop to help. The person is grateful.
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Uwe Schmidt proslijedio/la je Tweet
Now seems like as good of a time as any to ask that anyone who has thought open source owes anyone anything to please read https://snarky.ca/setting-expectations-for-open-source-participation/ … or watch the talk it was inspired by to understand why that's the wrong view to hold and how it's detrimental to OSS
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Bonus: You can now export 2D StarDist segmentations as ImageJ ROIs to be used in
@FijiSc. Also, we found our pre-trained 2D model to work well for a variety of fluorescence microscopy images. Give it a try before training your own. https://nbviewer.jupyter.org/github/mpicbg-csbd/stardist/blob/master/examples/other2D/export_imagej_rois.ipynb …pic.twitter.com/d0QjHYX2Mm
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We just revamped our StarDist code to now cover both 2D and 3D versions, including detailed example notebooks. Code: https://github.com/mpicbg-csbd/stardist … Examples: https://github.com/mpicbg-csbd/stardist/tree/master/examples … (thanks to
@SuperResoluSian for the cute new logo)Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi
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