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  1. proslijedio/la je Tweet
    3. velj
    Odgovor korisnicima

    Good to hear that its helpful for you! :) As for batch processing, here's a small jython script that runs stardist on all files in a folder:

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  2. proslijedio/la je Tweet
    21. sij

    rounding off the day with Stardist as a Fiji plugin.

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  3. proslijedio/la je Tweet
    21. sij

    Day 2 in Heidelberg: talks about image restoration with neural networks.

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  4. proslijedio/la je Tweet
    10. sij

    Thanks to the heroic efforts of there is now a Fiji plugin of StarDist that allows to apply trained models! Check it out at

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  5. 10. sij

    We released a plugin for ! 🎉 It ships with a versatile model that we found to work well for segmenting cell nuclei in a variety of challenging (2D) fluorescence microscopy images. 🌟

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  6. proslijedio/la je Tweet
    11. svi 2019.

    “I’ll Finish it in the Hotel Room after Arriving at the Conference the Night Before: An Autoethnographic Interrogation of Procrastination and Spectacular Time Misestimation in the Academy”

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  7. proslijedio/la je Tweet
    18. stu 2019.
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  8. proslijedio/la je Tweet
    18. stu 2019.

    is changing the way we do . E.g. tuning parameters of workflows becomes a completely different experience with instant feedback. We're happy and to share it with everyone! Today out in : 🥳

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  9. proslijedio/la je Tweet
    6. stu 2019.

    This is some advice I had shared with my lab on how to shorten your paper to fit the page limit. With the deadline coming up, I thought I'd share it widely.

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  10. proslijedio/la je Tweet
    25. lis 2019.

    My wonderful friend Eloise has just launched Emmeline Education, a company that runs workshops on gender, equality, and diversity. Visit their website here ⬇️ Please RT and spread the word ☺️♀️🌈

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  11. proslijedio/la je Tweet
    24. lis 2019.

    Anybody else do the thing where you put off a small task for a few days, and then a few more days, and then just a few more until it suddenly becomes the *thing* on your to-do list that you're afraid of for like 3 months until you take the 20 minutes to do it? Or is that just me

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  12. proslijedio/la je Tweet

    I'm over the moon to officially announce , a fast n-dimensional array viewer in Python! With , , and especially , and many others!

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  13. proslijedio/la je Tweet
    16. lis 2019.

    Spontaneous 👏 and tons of questions 🙋‍♂️ when shows results of dense cell segmentation using (slides from )

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  14. proslijedio/la je Tweet
    16. lis 2019.
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  15. proslijedio/la je Tweet
    3. lis 2019.
    Odgovor korisnicima i sljedećem broju korisnika:

    "Do it yourself" publishing has been LIBERATING. You don't notice how "traditional" publishing warps your approach to science until you leave it behind. Arguably the biggest advantage: I can focus on "how can I advance my field?", rather than "how can I get into a good journal?"

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  16. proslijedio/la je Tweet
    27. kol 2019.

    I've got a literally life and death one. 5G cell networks are going to set back weather forecasting ~30 yrs bc they operate at frequencies too near that of water vapor in the atmosphere, harming measurements. We'll lose 2-3 days' worth of accuracy in hurricane path forecasting.

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  17. proslijedio/la je Tweet
    26. kol 2019.

    A hypothetical So you walk to work each day. One day you come upon someone having trouble changing a tire. You think "I know how to change a tire, and it will only make me a little late for work" so you stop to help. The person is grateful.

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  18. proslijedio/la je Tweet
    18. kol 2019.

    Now seems like as good of a time as any to ask that anyone who has thought open source owes anyone anything to please read or watch the talk it was inspired by to understand why that's the wrong view to hold and how it's detrimental to OSS

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  19. 14. kol 2019.

    Bonus: You can now export 2D StarDist segmentations as ImageJ ROIs to be used in . Also, we found our pre-trained 2D model to work well for a variety of fluorescence microscopy images. Give it a try before training your own.

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  20. 14. kol 2019.

    We just revamped our StarDist code to now cover both 2D and 3D versions, including detailed example notebooks. Code: Examples: (thanks to for the cute new logo)

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