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trvrb's profile
Trevor Bedford
Trevor Bedford
Trevor Bedford
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@trvrb

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Trevor BedfordVerified account

@trvrb

Scientist @fredhutch, studying viruses, evolution and immunity. Collection of #COVID19 threads here: https://bedford.io/misc/twitter/ 

Seattle, WA
bedford.io
Joined December 2010

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    Trevor Bedford‏Verified account @trvrb Apr 23

    Trevor Bedford Retweeted Trevor Bedford

    We can compare #COVID19 1% infection fatality rate with an expected >80% attack rate (R0 of ~3) to seasonal influenza with 0.1% IFR and yearly attack rate of ~10%. Simple math would put unmitigated spread as >80X worse than a typical flu season.https://twitter.com/trvrb/status/1253398325245603840 …

    Trevor Bedford added,

    Trevor BedfordVerified account @trvrb
    Thoughts on seroprevalence in NYC. I'm not at all surprised by an estimate of 21% seropositive in NYC as discussed by @NYGovCuomo today (https://twitter.com/NYGovCuomo/status/1253353516803993600 …). 1/6
    Show this thread
    2:32 PM - 23 Apr 2020
    • 928 Retweets
    • 2,000 Likes
    • Fernando Gonzalez-Ca Bandy々 L'Actu en Perspectives Dr Alison Peel Jason Lyon dl willson ☕️🥊🕶🐝 Kenneth Sánchez Kyle Conway 康有为 Dan Wong
    87 replies 928 retweets 2,000 likes
      1. Trevor Bedford‏Verified account @trvrb Apr 23

        To be clear, these are numbers for NYC. Demographics and health system will affect IFR (can easily be 0.5% in other settings). Density / behavior will affect R0 (can easily be R0 of 2 / 50% attack rate). In these other settings, we then are "just" 25X worse than a flu season.

        26 replies 77 retweets 297 likes
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      2. tradewind‏ @akatradewind Apr 23
        Replying to @trvrb

        Without age-stratification, these discussions are more misleading than informative.

        2 replies 1 retweet 18 likes
      3. Trevor Bedford‏Verified account @trvrb Apr 23
        Replying to @akatradewind

        Yes. Age-stratification hugely important. But the 10X differential in IFR between COVID-19 and seasonal flu appears to be perhaps somewhat constant across age groups: https://github.com/clauswilke/COVID19-IFR ….

        5 replies 13 retweets 93 likes
      4. 2 more replies
      1. New conversation
      2. Dmitry Kobak‏ @hippopedoid Apr 23
        Replying to @trvrb

        Where does the 0.1% IFR number for seasonal flu come from? According to this meta-analysis of 2009 flu, it's about 0.01%, a whole order of magnitude smaller. See Figure 3. Can it be true?https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3809029/ …

        8 replies 12 retweets 35 likes
      3. Trevor Bedford‏Verified account @trvrb Apr 23
        Replying to @hippopedoid

        Trevor Bedford Retweeted Trevor Bedford

        H1N1pdm was a significantly more mild virus compared to more typical H3N2 seasonal flu.https://twitter.com/trvrb/status/1253410056059547648 …

        Trevor Bedford added,

        Trevor BedfordVerified account @trvrb
        Replying to @whitpyles
        Very roughly. Seasonal flu infects 10-15% of the population every year (based on serology + other data points), so ~30-50 million. Typical flu seasons result in deaths of ~30-50k (based mainly on modeling of excess deaths). This gives the rough 0.1% infection-to-fatality ratio.
        2 replies 10 retweets 60 likes
      4. 2 more replies
      1. New conversation
      2. William Eden‏ @WilliamAEden Apr 23
        Replying to @trvrb

        I get how expect attack rate is calculated from R0, but in practice don’t we observe that the attack rate is usually below this theoretical value for real world infections? (Btw I’m in the much-worse-than-flu camp, but I do want to be careful with our estimates)

        1 reply 1 retweet 18 likes
      3. Trevor Bedford‏Verified account @trvrb Apr 23
        Replying to @WilliamAEden

        Yes. Agreed. Even without drastic measures, people will behave differently and this will reduce R0. BTW, an SIR epidemic model would have R0 of 3 result in 94% of the population infected due to "overshoot" (https://twitter.com/CT_Bergstrom/status/1252077930286444545 …). I chose ~80% to be between 66% and 94%.pic.twitter.com/KBKWcOH5pd

        1 reply 3 retweets 42 likes
      4. 1 more reply
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      2. Edward F. Brown‏ @efb_1 Apr 23
        Replying to @trvrb

        By now we'd probably be able to identify an actual population where 80% had been infected and 1% had died for pop. mortality of ~ 0.8%, if these numbers were correct. This does not disprove your assumption, but it gives me hope that things are better than this.

        1 reply 1 retweet 7 likes
      3. Trevor Bedford‏Verified account @trvrb Apr 23
        Replying to @efb_1

        Estimates of population fatality rate of ~0.6% in Bergamo with 70% attack rate: http://medrxiv.org/content/10.1101/2020.04.15.20067074v2 …

        7 replies 22 retweets 85 likes
      4. 2 more replies
      1. New conversation
      2. Todd Heberlein‏ @toddheberlein Apr 23
        Replying to @trvrb

        Question: For a population the size of the United States (330 million), does this suggest a potential death toll of 330m * 0.8 * 0.01 = 2.6 million? I feel like I don't understanding the attack rate. My (low confidence) interpretation is 80% of population will get COVID-19. ???

        3 replies 4 retweets 16 likes
      3. Claus Wilke‏ @ClausWilke Apr 23
        Replying to @toddheberlein @trvrb

        Yes, it does. Btw., that's basically the prediction Imperial College made back in mid-March, using much more sophisticated modeling. Nothing has fundamentally changed since then in our basic understanding of the fatality rates etc. https://www.imperial.ac.uk/media/imperial-college/medicine/sph/ide/gida-fellowships/Imperial-College-COVID19-NPI-modelling-16-03-2020.pdf …pic.twitter.com/yVUbged8Y6

        1 reply 7 retweets 46 likes
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