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Tom Kazimiers proslijedio/la je Tweet
Exciting week for us. Second
#connectomics study out on@biorxivpreprint focussing on#Drosophila thermosensory and hygrosensory circuits led by Lisa Marin@flyconnectome@CamZoology. Collaboration with@Nemvec@BrandeisU@dddavi@Landgraf10006 1/7 https://www.biorxiv.org/content/10.1101/2020.01.20.912709v1 … https://twitter.com/biorxivpreprint/status/1219648832658604034 …pic.twitter.com/zV1HgAWwbl
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Tom Kazimiers proslijedio/la je Tweet
Our work here
@flyconnectome may be one of the last big beasts of the manual reconstruction era. See a spike in productivity when@Chinasaurli made his partial neuron auto-segmentation available to us? (essential@catmaid plumbing from@perlman@tomkazimiers) https://twitter.com/fly_papers/status/1219368255157985280 …pic.twitter.com/3TYt9tmLQR
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Tom Kazimiers proslijedio/la je Tweet
Building on previous work from
@zhihaozheng,@dddavi et al we reconstructed, identified and analysed all 346 olfactory projection neurons (PNs) using@catmaid. ~2-3x more PNs than previously reported! 2/12pic.twitter.com/Yc7bCMhaawHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Tom Kazimiers proslijedio/la je Tweet
Excited to share our
@biorxivpreprint:#connectomics reconstruction of olfactory circuits in the#Drosophila brain led by@as_bates@MRC_LMB,@uni_matrix@martamcosta2@CamZoology. Collaboration with@ddavi,@ScottishWaddell, Gerry Rubin@HHMIJanelia 1/12 https://www.biorxiv.org/content/10.1101/2020.01.19.911453v1 …pic.twitter.com/HxzhfWT5Pt
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Tom Kazimiers proslijedio/la je Tweet
New
@biorxivpreprint on synapse-resolution reconstruction of motor control circuits in the Drosophila ventral nerve cord (VNC) led by@jasper_tms,@davidhildebrand, and Brett Graham. A great collaboration with the labs of@casa_tuthill &@janfunkey. 1/n https://www.biorxiv.org/content/10.1101/2020.01.10.902478v1 …pic.twitter.com/EDOPnvPKUR
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Tom Kazimiers proslijedio/la je Tweet
Awesome work by
@julia_buhmann! Here is a random sample of 1 million of her post synaptic sites (green) shown alongside the brain mesh (purple). This dataset will hopefully be a useful resource for anyone working with FAFB https://twitter.com/janfunkey/status/1205554636259778560 …pic.twitter.com/qpK1SAv34W
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Tom Kazimiers proslijedio/la je Tweet
Automatic prediction of synaptic links in a whole Drosophila brain: Read about
@julia_buhmann's method in our preprint, result of a fruit(fly)ful collaboration with the labs of@ddavi,@gsxej,@herrsaalfeld, and@darbly!#connectomics#machinelearning https://www.biorxiv.org/content/10.1101/2019.12.12.874172v1 …pic.twitter.com/9Igu4oNIUA
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Tom Kazimiers proslijedio/la je Tweet
The LMB welcomes Marta Zlatic as a new Group Leader. She will continue working to advance our understanding of how the structure and organisation of the central nervous system relates to its function in learning and decision making https://www2.mrc-lmb.cam.ac.uk/the-lmb-welcomes-marta-zlatic-as-a-new-group-leader/ …
#LMBNewspic.twitter.com/GiNMGmZEFW
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Tom Kazimiers proslijedio/la je Tweet
Today is our first day at
@MRC_LMB. Thank you@HHMIJanelia for these wonderful 8 years, enabling us to deliver the#Drosophila larval brain#connectome. Looking forward to working with outstanding scientists and facilities at the LMB! PS: We are hiring! Video by@uni_matrix https://twitter.com/MRC_LMB/status/1201509384876154880 …pic.twitter.com/2kO4hVWWYdHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Beautiful! And a big collaborative effort in a single
@catmaid setup with ~275 users who created ~44MM nodes that make up ~1.2MM neurons + fragments (= ~10.7m!), connected through currently ~1.1MM synaptic nodes. All software open source, relying on@PostgreSQL +@djangoproject.https://twitter.com/ScottishWaddell/status/1179121112548020226 …
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Tom Kazimiers proslijedio/la je Tweet
And check out the stunning front cover made by
@uni_matrix using the current tracing in the@dddavi FAFB volumepic.twitter.com/oFsLvB3NLy
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Tom Kazimiers proslijedio/la je Tweet
Related news for FAFB-ers and FAFB-interested:
@gsxej and I recently received notice of a BRAIN award to support deployment of neurite & synapse autosegmentations (from e.g.@stardazed0,@Chinasaurli,@neptunes5thmoon,@janfunkey) and associated analytics to the community. 1/2https://twitter.com/ScottishWaddell/status/1179121112548020226 …
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Tom Kazimiers proslijedio/la je Tweet
#Paintera 0.15.0 is available for installation on conda: conda install -c hanslovsky paintera This release includes a cool new feature added by@IgorPisarev93 about two weeks ago: Select multiple neurons and merge them all with ctrl-Enterhttps://github.com/saalfeldlab/paintera …Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Tom Kazimiers proslijedio/la je Tweet
Awesome
#paintera *live* demo by@hanslovsky at#DAISlearnathon2019. Step by step including installation. https://github.com/saalfeldlab/paintera …pic.twitter.com/RB0liFFDJC
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Tom Kazimiers proslijedio/la je Tweet
We are also hiring software engineers -- send me an email if interested: https://www.pdn.cam.ac.uk/directory/albert-cardona …
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It's finally possible to animate sections of image stacks in
@catmaid's 3D Viewer. This allows to create videos like this one, showing neurons published by Zheng et al. 2018 (@zhihaozheng) in the FAFB dataset (@dddavi) while browsing through a large part of the ssTEM sections.pic.twitter.com/HL1lBIoRQEHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Tom Kazimiers proslijedio/la je Tweet
Eye candy! Central complex/ellipsoid body, fruit fly; neurons reconstructed by
@SebastianSeung Lab@PrincetonNeuro; I render in@maxon3d#c4d +@OTOY#octane#sciart#connectomepic.twitter.com/0LOiSFrIdo
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Tom Kazimiers proslijedio/la je Tweet
Apply for 'Women in Computational Biology' organized by Kristin Branson, Ann Hermundstad and
@kainmuellerdhttps://www.janelia.org/you-janelia/conferences/women-in-computational-biology …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Thanks to comments by Jürgen Rybak and Lydia Gruber at
@MPI_CE I added simple absolute polyadic synapse coloring to@catmaid. It color-codes the number of postysynapses and sometimes reveals small patterns, like in these Drosophila larva L1 Kenyon Cells traced by@EichlerKathi.pic.twitter.com/wnqBgxvzvq
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Tom Kazimiers proslijedio/la je Tweet
Looking forward to "promote progressive changes in academic culture" now as a member of
#eLifeAmbassadors https://elifesciences.org/inside-elife/a946c355/elife-community-ambassadors-243-volunteers-join-the-programme-in-2019 …pic.twitter.com/f8YEzB2MZp
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