Tom Kazimiers

@tomkazimiers

Developer of , a collaborative neuron reconstruction and analysis environment. Open source. Science.

HHMI Janelia Research Campus
Vrijeme pridruživanja: ožujak 2016.

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  1. proslijedio/la je Tweet
    21. sij
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  2. proslijedio/la je Tweet
    21. sij

    Our work here may be one of the last big beasts of the manual reconstruction era. See a spike in productivity when made his partial neuron auto-segmentation available to us? (essential plumbing from )

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  3. proslijedio/la je Tweet
    20. sij
    Odgovor korisnicima i sljedećem broju korisnika:

    Building on previous work from , et al we reconstructed, identified and analysed all 346 olfactory projection neurons (PNs) using . ~2-3x more PNs than previously reported! 2/12

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  4. proslijedio/la je Tweet
    20. sij
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  5. proslijedio/la je Tweet
    15. sij

    New on synapse-resolution reconstruction of motor control circuits in the Drosophila ventral nerve cord (VNC) led by , , and Brett Graham. A great collaboration with the labs of & . 1/n

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  6. proslijedio/la je Tweet
    13. pro 2019.

    Awesome work by ! Here is a random sample of 1 million of her post synaptic sites (green) shown alongside the brain mesh (purple). This dataset will hopefully be a useful resource for anyone working with FAFB

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  7. proslijedio/la je Tweet
    13. pro 2019.

    Automatic prediction of synaptic links in a whole Drosophila brain: Read about 's method in our preprint, result of a fruit(fly)ful collaboration with the labs of , , , and !

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  8. proslijedio/la je Tweet
    2. pro 2019.

    The LMB welcomes Marta Zlatic as a new Group Leader. She will continue working to advance our understanding of how the structure and organisation of the central nervous system relates to its function in learning and decision making

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  9. proslijedio/la je Tweet
    2. pro 2019.

    Today is our first day at . Thank you for these wonderful 8 years, enabling us to deliver the larval brain . Looking forward to working with outstanding scientists and facilities at the LMB! PS: We are hiring! Video by

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  10. 3. lis 2019.

    Beautiful! And a big collaborative effort in a single setup with ~275 users who created ~44MM nodes that make up ~1.2MM neurons + fragments (= ~10.7m!), connected through currently ~1.1MM synaptic nodes. All software open source, relying on + .

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  11. proslijedio/la je Tweet
    1. lis 2019.

    And check out the stunning front cover made by using the current tracing in the FAFB volume

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  12. proslijedio/la je Tweet
    2. lis 2019.

    Related news for FAFB-ers and FAFB-interested: and I recently received notice of a BRAIN award to support deployment of neurite & synapse autosegmentations (from e.g. , , , ) and associated analytics to the community. 1/2

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  13. proslijedio/la je Tweet
    8. srp 2019.

    0.15.0 is available for installation on conda: conda install -c hanslovsky paintera This release includes a cool new feature added by about two weeks ago: Select multiple neurons and merge them all with ctrl-Enter

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  14. proslijedio/la je Tweet
    25. lip 2019.
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  15. proslijedio/la je Tweet
    20. lip 2019.

    We are also hiring software engineers -- send me an email if interested:

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  16. 22. svi 2019.

    It's finally possible to animate sections of image stacks in 's 3D Viewer. This allows to create videos like this one, showing neurons published by Zheng et al. 2018 () in the FAFB dataset () while browsing through a large part of the ssTEM sections.

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  17. proslijedio/la je Tweet
    29. tra 2019.

    Eye candy! Central complex/ellipsoid body, fruit fly; neurons reconstructed by Lab ; I render in +

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  18. proslijedio/la je Tweet
    23. tra 2019.

    Apply for 'Women in Computational Biology' organized by Kristin Branson, Ann Hermundstad and

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  19. 22. tra 2019.

    Thanks to comments by Jürgen Rybak and Lydia Gruber at I added simple absolute polyadic synapse coloring to . It color-codes the number of postysynapses and sometimes reveals small patterns, like in these Drosophila larva L1 Kenyon Cells traced by .

    More postsynapses for presynapses in the left part of the image of these Kenyon Cells.
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  20. proslijedio/la je Tweet
    16. tra 2019.
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