Martin Steinegger

@thesteinegger

Postdoc at Lab. Working on assembly (plass), clustering (linclust), pathogens and homology search for metagenomes (mmseqs2).

Vereinigte Staaten
Vrijeme pridruživanja: listopad 2016.

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  1. Prikvačeni tweet
    27. sij

    Conterminator terminates contamination in genomes. and me report over 114K/2M contaminations in RefSeq/GenBank and two unexpected ones in GRCH38 alt. scaffold and C. elegans ref. genome. Preprint: Code:

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  2. How to sample genomes from GTDB using Python

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  3. proslijedio/la je Tweet
    3. velj

    Read Until to enrich >700 genes to mean 30x coverage on single flowcell. Custom panels (up to 25,600 targets so far) as easy as providing a coordinate file. Read more at - thanks to , and team.

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  4. proslijedio/la je Tweet
    3. velj

    Introducing "Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED" with et al. Does selective enrichment and depletion of any targeted genomic region purely in software for sequencing.

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  5. proslijedio/la je Tweet
    30. sij

    Introducing Sapling: Accelerating Suffix Array Queries with Learned Data Models with and .

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  6. proslijedio/la je Tweet
    29. sij

    Whow ! Thanks you so much guys ! For the stickers and the absolutely amazing tools! @MMseqs FTW!

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  7. proslijedio/la je Tweet
    21. sij

    hybrid Nanopore+Illumina assemblies of redwood genomes are 30+ times more contiguous than assemblies generated from Illumina data alone

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  8. 16. sij

    New "Uniclust" 2019_11 database release. We () use the UniRef30 for our HHblits database. UniRef is clustered by MMseqs2 at 30% identity and 80% sequence overlap to the longest sequence. Thanks to Michael Wang and the Uniref team at !

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  9. proslijedio/la je Tweet
    4. sij
    Odgovor korisniku/ci

    did you see and ? They both cover many of the point I make on transitioning from C/C++ to Rust, but I also plan to publish a post this week with more details

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  10. proslijedio/la je Tweet
    4. sij

    sourmash 3.0.0 released! Officially migrated from C++ to 🎉 Release notes: PyPI: $ pip install sourmash==3.0.0 Bioconda: $ conda install -c conda-forge -c bioconda sourmash=3.0.0

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  11. proslijedio/la je Tweet

    Electrical recognition of the twenty proteinogenic amino acids using an aerolysin nanopore

    , , i još njih 5
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  12. proslijedio/la je Tweet
    18. pro 2019.
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  13. 17. pro 2019.

    Today 7 years ago Maria Hauser made the first commit to MMseqs. More than 5400 commits later we want to thank all our users, funders and friends. To many more years to come!

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  14. proslijedio/la je Tweet

    StringTie2 from , and co. An update of the popular reference-guided transcriptome assembler, now includes the ability to assemble long reads. It's more accurate than other assemblers, while being quicker with lower memory requirements

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  15. proslijedio/la je Tweet
    12. pro 2019.

    Happy coincidental meeting with in HCMC, he gave me this sweet Soeding lab swag!

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  16. 9. pro 2019.

    MMseqs2 Advent Door 9: Getting support via GitHub issues can be quite intimidating, that's why we are introducing , so we can help you succeed with our tools. No login required, just ask your questions!

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  17. proslijedio/la je Tweet
    5. pro 2019.

    Whoa. based *protein* sequencing finally demonstrated. Mass spec is so 20th century now (cc )

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  18. 6. pro 2019.
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  19. 6. pro 2019.

    New release of Plass - our protein level assembler - for Krampus day and advent door 6: Plass improved a lot thanks to Annika Seidel. It needs 12 times less disk space and improves on usability. Install from Bioconda: conda install plass

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  20. 5. pro 2019.

    MMseqs2 Advent Door 5: Continuous integration improved our code quality and life. On every commit runs regression of 33 usage scenarios on 4xLinux(+ASan), macOS and Windows. runs 5 diff. compilers. runs Plass tests. Thanks a lot for these resources! <3

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