Stephen Plaza

@stephenplaza

Technical lead and software/project manager of the Fly EM project () .

Janelia Research Campus
Vrijeme pridruživanja: veljača 2015.

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  1. Prikvačeni tweet
    22. sij

    Proud to introduce "hemibrain" : a connectome of the Drosophila central brain. . Please see overview website: Play with data on neuPrint:

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  2. 29. sij

    For part of Jan 22nd, there was an error in the exported adjacency files (CSVs), which could affect some analyses. Please re-download at

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  3. 29. sij

    We will hopefully re-export a minor revision soon to fix a few of the more database-related issues ("v1.0.1"). The next larger revision, "v1.1", which will reflect some improvements to the underlying reconstruction, is not for a few months.

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  4. 29. sij

    We are maintaining a list of known issues that are mostly straightforward to address: A couple technical details in the following thread...

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  5. proslijedio/la je Tweet
    23. sij
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  6. 22. sij

    next steps: and various collaborating labs will submit several papers in the next several weeks. Reconstruction revisions (hopefully minor) to v1.0 by around April. Currently ramping up to reconstruct the CNS...

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  7. 22. sij

    In an avalanche of tweets, I forget to shout-out the integral work of the Hess lab: Shan Xu and truly ground-breaking fib-sem data

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  8. proslijedio/la je Tweet
    22. sij

    I recommend checking out the "mushroom body" interactive link! Grateful for this collaboration with and hope the resource proves useful for the community.

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  9. 22. sij

    Here is a link for all data we inject into neuPrint in CSV format. If you want everything that goes into neuPrint (sans the 3d data and skeletons), download from here:

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  10. proslijedio/la je Tweet
    22. sij

    The feat by researchers at and Howard Hughes Medical Institute amounts to a big “told you so” to skeptics who said it couldn’t be done this soon, this inexpensively, or this well.

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  11. 22. sij

    For people that are interesting in bulk downloading data ... it is best not to do this through the interactive UI in neuPrint. Please consult for more details. We will also provide a big directory of all the skeleton morphologies soon as well.

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  12. 22. sij

    A better link for viewing neuroglancer:

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  13. proslijedio/la je Tweet
    22. sij

    Proud to introduce "hemibrain" : a connectome of the Drosophila central brain. . Please see overview website: Play with data on neuPrint:

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  14. 22. sij

    We tried to make the best dataset possible but this is "v1.0". We will have a new revision in a few months. Feel free to make comments and add annotations to the dataset using neuroglancer.

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  15. 22. sij

    But let's say you don't care about flies and just like big graphs. Here is a compact 26TB->25MB data model reduction containing the adjacency matrix. We annotate brain region information for each connection to make the model richer.

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  16. 22. sij

    We are hoping that non-fly people will fall in love with flies! Here are some of our favorite neurons!

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  17. 22. sij

    neuroglancer is a great way to browse the data. Jeremy made a lot of nice additions recently:

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  18. 22. sij

    For new neuPrint users ... you will need to login with any google email credential. Tutorials and instructions in the 'i' section. Tutorial here: Other questions or issues today:

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  19. 22. sij

    Many thanks to large proofreader effort led by Pat Rivlin and Ruchi Parekh. Incredible software and algorithm group , Stuart Berg, , Lowell Umayam, , Tom Dolafi, Don Olbris, , Rob Svirskas ... and many others!

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  20. 22. sij

    Takes a large team effort: thanks Janelia, , Connectomics Group at Google , and many others. Team Science!!

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