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Connectomics at Google is hiring. DM me or email viren@google.com if interested. https://ai.google/research/teams/perception/connectomics/ …pic.twitter.com/3EiCyz9vhZ
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Thanks! Good old Amira. BTW, for those who aren't aware, you can make videos like https://youtu.be/X4eVmSxTZ8Y?t=41 … directly from Neuroglancer via its Python scripting capability: https://github.com/google/neuroglancer/blob/6d34ce63727e5db498d0f61ff98e4617d745d3ef/python/neuroglancer/tool/video_tool.py …
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Some details about this effort: https://www.youtube.com/watch?v=PQGLsQeohS0&feature=youtu.be&t=3396 …https://twitter.com/FritzPreusser/status/1161455422525575168 …
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https://neuroglancer-demo.appspot.com/fafb.html?#!%7B%22layers%22:%5B%7B%22source%22:%22precomputed://gs://neuroglancer-fafb-data/fafb_v14/fafb_v14_orig_sharded%22%2C%22type%22:%22image%22%2C%22name%22:%22fafb_v14%22%2C%22visible%22:false%7D%2C%7B%22source%22:%22precomputed://gs://neuroglancer-fafb-data/fafb_v14/fafb_v14_clahe_sharded%22%2C%22type%22:%22image%22%2C%22name%22:%22fafb_v14_clahe%22%7D%2C%7B%22type%22:%22segmentation%22%2C%22mesh%22:%22precomputed://gs://neuroglancer-fafb-data/elmr-data/FAFBNP.surf/mesh%22%2C%22segments%22:%5B%221%22%2C%2210%22%2C%2211%22%2C%2212%22%2C%2213%22%2C%2214%22%2C%2215%22%2C%2216%22%2C%2217%22%2C%2218%22%2C%2219%22%2C%222%22%2C%2220%22%2C%2221%22%2C%2222%22%2C%2223%22%2C%2224%22%2C%2225%22%2C%2226%22%2C%2227%22%2C%2228%22%2C%2229%22%2C%223%22%2C%2230%22%2C%2231%22%2C%2232%22%2C%2233%22%2C%2234%22%2C%2235%22%2C%2236%22%2C%2237%22%2C%2238%22%2C%2239%22%2C%224%22%2C%2240%22%2C%2241%22%2C%2242%22%2C%2243%22%2C%2244%22%2C%2245%22%2C%2246%22%2C%2247%22%2C%2248%22%2C%2249%22%2C%225%22%2C%2250%22%2C%2251%22%2C%2252%22%2C%2253%22%2C%2254%22%2C%2255%22%2C%2256%22%2C%2257%22%2C%2258%22%2C%2259%22%2C%226%22%2C%2260%22%2C%2261%22%2C%2262%22%2C%2263%22%2C%2264%22%2C%2265%22%2C%2266%22%2C%2267%22%2C%2268%22%2C%2269%22%2C%227%22%2C%2270%22%2C%2271%22%2C%2272%22%2C%2273%22%2C%2274%22%2C%2275%22%2C%228%22%2C%229%22%5D%2C%22name%22:%22neuropil-regions-surface%22%2C%22visible%22:false%7D%2C%7B%22source%22:%22precomputed://gs://neuroglancer-fafb-export-9607fa3b682cf0b216e78c4a901fb4dc/fafb-ffn4-20190521%22%2C%22type%22:%22segmentation%22%2C%22segments%22:%5B%220%22%2C%221039790421%22%2C%221052402087%22%2C%221437407750%22%2C%221757715048%22%2C%221820336831%22%2C%222137494224%22%2C%222333573868%22%2C%222458435971%22%2C%222654523128%22%2C%222718586878%22%2C%222784531530%22%2C%223034986641%22%2C%223094611157%22%2C%223099629050%22%2C%223227301952%22%2C%223295163659%22%2C%223304421378%22%2C%223304597645%22%2C%223360470755%22%2C%223361517798%22%2C%223425861411%22%2C%223426496351%22%2C%223549529575%22%2C%223614909392%22%2C%223615434330%22%2C%223673088460%22%2C%223686231490%22%2C%223751551709%22%2C%223805583159%22%2C%223808275145%22%2C%223869621499%22%2C%223872139940%22%2C%223872152622%22%2C%223933053648%22%2C%223933685438%22%2C%223934313542%22%2C%223935572740%22%2C%223993967344%22%2C%223999614056%22%2C%224062428054%22%2C%224122129251%22%2C%224125213060%22%2C%224126731855%22%2C%224126748194%22%2C%224127250107%22%2C%224129874698%22%2C%224131141101%22%2C%224133377850%22%2C%224139282309%22%2C%224189931190%22%2C%224190559528%22%2C%224191815997%22%2C%224319296523%22%2C%224322456172%22%2C%224323336422%22%2C%224444895869%22%2C%224447427280%22%2C%224450823660%22%2C%225220154424%22%2C%22974450606%22%5D%2C%22name%22:%22fafb-ffn4-20190521%22%7D%5D%2C%22navigation%22:%7B%22pose%22:%7B%22position%22:%7B%22voxelSize%22:%5B4%2C4%2C40%5D%2C%22voxelCoordinates%22:%5B130811%2C76973%2C4848%5D%7D%7D%2C%22zoomFactor%22:52.51606484764309%7D%2C%22perspectiveOrientation%22:%5B0%2C0.7071067690849304%2C-0.7071067690849304%2C0%5D%2C%22perspectiveZoom%22:4280.020108063078%2C%22showSlices%22:false%2C%22selectedLayer%22:%7B%22layer%22:%22fafb_v14%22%7D%2C%22layout%22:%223d%22%7D …pic.twitter.com/s0VrjggRH5
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An interactive reconstruction of an electron microscopy fly brain using automated segmentation: https://bit.ly/2X0aL7Q . Led by
@Chinasaurli in collab with@michalj and others at Google,@zhihaozheng and@dddavi (HHMI/UVM),@gsxej (MRC). Some fun examples:pic.twitter.com/9kOwpcQbVp
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https://www.biorxiv.org/content/10.1101/605634v1 … Automated Reconstruction of a Serial-Section EM Drosophila Brain with Flood-Filling Networks and Local Realignment. Publicly accessible segmentation coming soon.pic.twitter.com/s0t7GTzx8o
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With
@michalj: Segmentation-Enhanced CycleGAN: enabling "zero-shot" neuron reconstruction. https://www.biorxiv.org/content/10.1101/548081v1 … Example of "translating" blockface SEM cortex to serial-section ATUM SEM cortex data:pic.twitter.com/ZQHXOVdYtm
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super informative talk from
@VamsiMootha about mitochondria function and dysfunction:https://youtu.be/Xw6hbf7CKvI -
Beautiful drosophila dataset from
@dddavi@zhihaozheng et al, now on public Neuroglancer: https://bit.ly/2SkiWsP as well as https://github.com/google/neuroglancer …pic.twitter.com/F2HEctANL4
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you might also be interested in a drosophila example here: https://youtu.be/5Wr5ghHF-gk?t=47m30s … (credit for video and segmentation goes to
@michalj). -
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New arbitrary-nested-synchronized-split-screen capability in Neuroglancer: drag a volume name to the corner of a panel to get a new panel. Amazing work by Jeremy Maitin-Shepard. Example: https://goo.gl/DbYxve pic.twitter.com/JSyx9P5h77
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https://goo.gl/gmPUx7 High-Precision Automated Reconstruction of Neurons with FFNs. In collaboration with amazing colleagues
@mpiNeuro.pic.twitter.com/UZlCt1ivVOPrikaži ovu nit
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