Sam Minot

@sminot

Scientist with a long-time passion for microbial genomics and the microbiome. He / him / his

Seattle, WA
Vrijeme pridruživanja: ožujak 2009.

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  1. 2. velj

    Can you use processes inside the reduce function in ? Perhaps with DSL2?

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  2. proslijedio/la je Tweet
    31. sij

    alright all you terrified dorks let me show you how to search for matching protein sequences because there is a CERTAIN GARBAGE PAPER OUT THERE

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  3. proslijedio/la je Tweet
    31. sij

    Skeptical to amplify this nonsense, but felt I had to address this. So much misinformation online about the novel coronavirus and this is no exception. The linked biorxiv paper is BS.

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  4. proslijedio/la je Tweet
    30. sij

    Pandas 1.0 is here! * Read the release notes: * Read the blogpost reflecting on what 1.0 means to our project: * Install with conda / PyPI: Thanks to our 300+ contributors to this release.

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    30. sij

    Today a patient made jokes about not shaking my hand because of . In front of my team. I have not left Australia. This is not sensible public health precautions. This is .

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  6. proslijedio/la je Tweet
    29. sij

    Causal relationships among the gut microbiome, short-chain fatty acids and metabolic diseases

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  7. proslijedio/la je Tweet
    30. sij

    We're looking for a postdoc who loves stats/machine learning and is interested in immunology, or who loves immunology and wants to grow computationally. Fun problems + great collabs + welcoming & energetic environment.

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  8. proslijedio/la je Tweet
    30. sij

    A remarkable collection of articles on the microbiome out now in Nature Outlook

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  9. 29. sij

    I want to use GitHub Actions to test my pipeline, but my workflow uses different Docker containers for different processes. I'm worried this won't work because you can't run Docker inside Docker. Have you solved this problem or folks?

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  10. proslijedio/la je Tweet
    28. sij

    artisanal genomes made from carefully selected reads and locally alignments with the original release of bowtie

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  11. 27. sij

    Is anyone starting to use GitHub actions to automatically build and push Docker images to a registry? What is the closest to push-button templates that you've found?

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  12. 24. sij

    It turns out that manuscript reviews take just as much time to complete now as they do to complete later. Also, they are kind of fun. Keep sending them my way, editors!

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    21. sij

    Under assumed equality in dist'n of observations in two groups up to a location shift, Mann-Wald tests whether medians differ across groups. Under this assumption, MW also tests whether 96.450247% quantiles differ, which might give you an idea how reasonable this assumption is.

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  14. proslijedio/la je Tweet

    🦠💤 Scientists identified a microbe associated with sleep in the of collaborative cross mice. Study by , , , & colleagues, out now in :

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  15. proslijedio/la je Tweet
    20. sij
    Odgovor korisnicima

    Here is how to setup access to the SRA data in the data in the cloud using sra toolkit . More posts coming soon

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  16. proslijedio/la je Tweet
    19. sij

    We are looking for a new teammate on our Fred Hutch communications team. Work with me, Claire Hudson and Tom Kim!

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  17. 19. sij

    What's the most recent update on where we can find SRA data in S3, ? Is the transfer still in progress or completed? How about different regions? Having trouble finding an updated summary of this exciting project

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  18. 15. sij

    One thing I like DSL-2 for is that I can decouple the effort to (a) get my processes working correctly and (b) setting up the control logic for the entire workflow. Importing processes from modules means never having to copy and paste huge blocks of `process` code

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  19. 15. sij

    And (of course) all of the code for eggnog-mapper is up on GitHub, and they keep updating the tool and the database!

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  20. 15. sij

    I keep being impressed with what a great resource is for metagenomics. There's a good Docker container available in , and you can easily download all of the reference data with a single command! (download_eggnog_data.py -y --data_dir ./)

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