Sina Booeshaghi

@sinabooeshaghi

Caltech PhD Student developing Single Cell Genomics Technologies in Lior Pachter's lab, MIT graduate in MechE & Math, tea & bicycle enthusiast

Vrijeme pridruživanja: svibanj 2013.

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  1. proslijedio/la je Tweet
    4. velj

    Nice thing of thermochromic material is that I can clearly see what is heating up in the structure. (Obviosly 3D printed)

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  2. 4. velj
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  3. proslijedio/la je Tweet
    2. velj

    An overall death rate of 2-3% in mainland China is often quoted for the Wuhan . However, the death rate differs vastly in Wuhan, the epicenter (the capital of Hubei Province), and in other regions in China.

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  4. proslijedio/la je Tweet
    2. velj

    This lightning talk by is straight 🔥🔥 Lightning talk with parallel scRNA-seq analysis in 1m gogogogo!

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    1. velj

    In our & work we use 's databases. Two months ago noticed some inconsistencies between 's cDNA fasta and GTF files and investigated with . Now has written up an in-depth analysis:

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  6. 1. velj

    Fantastic analysis of how GTF and cDNA FASTA differ; performed by my colleague

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  7. proslijedio/la je Tweet
    30. sij

    It looks weird, but apparently true: photographer Sam Rowley captured this unusual picture of two mice engaging in what appears to be a mortal combat as part of the Natural History Museum in London's Wildlife Photographer of the Year competition

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    The chassis was stuck on a cargo ship for two months, but it finally arrived! The device is assembled and whirring :) Since I used different motors, some soldering was needed. Also, due to imperfections in the 3D print, I had to file the chassis here and there.

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  9. proslijedio/la je Tweet
    30. sij

    My favorite step of the article submission process is waiting for the single PDF I uploaded to be converted to a PDF

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  10. proslijedio/la je Tweet
    30. sij

    Disappointed to see a manuscript with term "NGS Sequencing" -- it is canonical to abbreviate that as NGSS. Of course, that risks someone using the term "NGSS Sequencing", which of course is better written NGSSS

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  11. 30. sij

    With kallisto I processed 15.2 billion SmartSeq2 reads in 6.5 hrs🚀, h/t

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  12. 30. sij
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  13. 29. sij

    Recent paper by Wolfien, Galow, Müller et al. in the labs of Andreas Hoeflich and Robert David used kallisto | bustools 🐻🚌🛠️ and BUSpaRse to perform RNA velocity on single-nuclei RNA-seq from a whole mammalian heart ❤️

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  14. proslijedio/la je Tweet
    28. sij

    Check this out: it's Bowtie2 running in the browser using WebAssembly! 🧬😀 This is still preliminary (I disabled SIMD and threads) but I'd like to figure out how this could be useful as a sandbox on the web; ideas are welcome! cc

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  15. 27. sij

    Listening in on a consortium call and one of the the bullet points on a slide was “Aim for papers..” How about instead we aim for science?

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  16. proslijedio/la je Tweet

    You didn't just erase a photo You erased a continent But I am stronger than ever

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  17. 22. sij

    The Bioinformatics Resource Center is hosting a workshop on the analysis of single-cell RNA-Seq data (no command line experience is required.) Register here

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  18. proslijedio/la je Tweet
    16. sij

    Check out this amazing Euler spiral made out of an orange peel by Jahnea, an amazing math student, who spoke about this shape in her junior speech. I had to frame it since it was so cool!

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  19. proslijedio/la je Tweet
    15. sij

    just finished a matplotlib lecture and these are my thoughts

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  20. proslijedio/la je Tweet
    15. sij

    Very disappointed that a recent paper in Plos CompBio does not provide code, but they provide a web service instead. What are people's thoughts on this?

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