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Scientific software teams may have to drop everything to work on papers rather than their software, and there may not be long term staff or even dedicated staff for the software. Why do we give such low priority to something that produces our results?
#FOSDEM@fosdemresearchpic.twitter.com/WEeJKINq0E – mjesto: Building AW
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The new UI is in final stages before release - good luck for your wrap up and launch,
@dspacetweets!#FOSDEM#FOSDEM2020@fosdemresearchpic.twitter.com/MWm2EIBnKN – mjesto: Building AW
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@LuytenBram:@dspacetweets is an institutional repository for publications, possibly owing its success to early localisation features. It's fascinating seeing how their UIs have evolved over the ages. Currently, they're makinh a new@angular UI.#FOSDEM2020@fosdemresearchpic.twitter.com/GIA7CIpFns – mjesto: Building AW
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This has been exacerbated with coronavirus preprint papers over the last few days. We need to share the science fast, but also review things fast to be safe and scientific.
#FOSDEM#FOSDEM2020@fosdemresearch – mjesto: Building AWPrikaži ovu nit -
Preprints are an amazing way to share science early, but lay people need to be aware that this is the pre-order review stage. (Don't get us wrong, preprints are amazing- you just need to be critical and examine any open reviews!)
#FOSDEM#FOSDEM2020@fosdemresearchpic.twitter.com/UGthDJOFZs – mjesto: Building AW
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Papers usually cost money
to read, whether or not we know whether the content is interesting. How can we advance knowledge, or even make sure people know what they need to, this way? Knowledge shouldn't be only for the rich. #FOSDEM#FOSDEM2020@fosdemresearchpic.twitter.com/VCBXwm4pqI – mjesto: Building AW
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@eLife has a mission to make scientific publishing open, better, more enjoyable, with openness built in by design - nice hat tip to@MozOpenLeaders here
#FOSDEM#FOSDEM2020@fosdemresearchpic.twitter.com/74AZyCWBhe – mjesto: Building AW
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A battle plan for better meetings? I'm sold. Love the consideration of all the stakeholders and creators in this diagram
#FOSDEM#FOSDEM2020@fosdemresearchpic.twitter.com/imtv19RYQV – mjesto: Building AW
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Next common theme of the day: let's write our own new tool for this, rather than re-using something existing! Humans... like to put their own stamp on things.
#FOSDEM#FOSDEM2020@fosdemresearchpic.twitter.com/6C8IFZY1Ju – mjesto: Building AW
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@StatnMap such a great talk, thank you so much!!pic.twitter.com/wsJQnuWSJD – mjesto: Building AW
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Next step: docs, docs, docs! For R, this involves writing vignettes, similar to jupyter notebooks, but in rmarkdown. Make sure the functions you wrote in the last step have comments explaining how/why to use them.
#FOSDEM2020#FOSDEM@fosdemresearchpic.twitter.com/uLkUFc7aVC – mjesto: Building AW
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Another common theme in
@fosdemresearch today - Sharing your scripts and code can be so scary! I promise we'll do our best to be nice
coding can and should be social and friendly. #FOSDEM#FOSDEM2020pic.twitter.com/IegBdKMHPp – mjesto: Building AW
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And we're being treated to a live demo! I've added a zoomed in screenshot to the filters, including languages, file types, people, organisations, countries - all gleaned via NLP. Really impressive!
#FOSDEM#FOSDEM2020@fosdemresearchpic.twitter.com/zDg4MI0KT0 – mjesto: Building AW
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@OpenRefine is currently funded by the brilliant essential open source@czi@cziscience program - so amazing to see support for OSS maintenance in science
the current CZI grant call is open for a few days more, and there will be another in ~6months #FOSDEM@fosdemresearchpic.twitter.com/eG1bVFdJTK – mjesto: Building AW
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@OpenRefine, don't feel bad about the stack and technical debt! At@intermineorg we've only recently left Ant, and still need to migrate away from Struts (also a discontinued web framework
)
I bet many projects are the same. #FOSDEM#FOSDEM2020@fosdemresearchpic.twitter.com/WY0cfziobn – mjesto: Building AW
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There's a beautiful visual faceted search UI in
@OpenRefine that allows you to filter rows before you apply any data cleaning transforms.#FOSDEM#FOSDEM2020@fosdemresearchpic.twitter.com/69dCP8a5Tn – mjesto: Building AW
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nice
@openrefine feature: clustering data and identifying/ fixing duplicate / similar data fields.#FOSDEM2020#FOSDEM@fosdemresearchpic.twitter.com/pKQHRBXIQL – mjesto: Building AW
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Word combines structure and content in a way that isn't good for long term data re-use or computational editing. LaTeX - complicated! Google docs proprietary, surrender your privacy
#FOSDEM2020#FOSDEM@fosdemresearch pic.twitter.com/Fa7wmxvB7f – mjesto: Building AW
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Excel can corrupt data - e.g. gene names - and convert them to dates


this is a research nightmare - but @lilscientista is sharing with us frictionless data validation tools to ensure your data stays in the right format!#FOSDEM#FOSDEM2020@fosdemresearchpic.twitter.com/t3XyFoGfkP – mjesto: Building AW
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