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GitHub - Gabaldonlab/jloh: A tool to extract LOH blocks from VCF, BAM and FASTA data

YOU can now find #JLOH, a simple tool too extract LOH blocks from simple variant data, at the following link: github.com/Gabaldonlab/jl #AcademicTwitter #AcademicChatter #bioinformatics #compbio #biology #ECCB2022

github.com

A tool to extract LOH blocks from VCF, BAM and FASTA data - GitHub - Gabaldonlab/jloh: A tool to extract LOH blocks from VCF, BAM and FASTA data

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Selecting the right storage architecture for your Nextflow pipelines | Nextflow

Nextflow

@nextflowio

May 4

🔍 Are you looking to optimize the performance of your #Nextflow pipelines? 🚀 Choosing the right storage architecture can make all the difference. 📖 Check out this article for tips to help you make the right decision: ow.ly/JgxK50OfN7j #datastorage #bioinformatics

nextflow.io

Exploring the pros and cons of various file systems and cloud object stores for your Nextflow pipeline

Mar 21

When your colleague and your friend camp at your poster to make it look interesting for others

gabaldonlab

Mar 8

Fantastic #ECFG16 with good representation of

research!

In case you missed my poster for

yesterday at #ECFG16 here it is. #JLOH is a toolkit to infer and analyse LOH blocks from simple data input (FASTA+BAM+VCF). Add it to your #variantcalling pipeline! github.com/gabaldonlab/jl #AcademicChatter #research #genomics

Mar 8

Seriously good read.

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Journal of Fungi MDPI

@JoF_MDPI

Aug 30, 2022

A review entitled “Turning Inside Out: #Filamentous_Fungal Secretion and Its Applications in Biotechnology, Agriculture, and the Clinic” from Vera Meyer et al. View full text at mdpi.com/2309-608X/7/7/

Ashley Ohstrom

@Ashley0hstrom

Mar 8

Anything really does go as Vera Meyer has shown fungi can be used to solve all of our worlds problems. From the production of biofuel, pigments, drugs, bioplastics, and even construction materials for houses: all be done with the power of fungi! #ECFG16 #fungi #Mycobuild

Miquel Àngel Schikora Tamarit and 3 others

Hard working day for

today at #ECFG16 posters and talks by several of us!

Girl next to me in the flight called someone on the phone for 1h50m (whole flight) using the airline Wi-Fi. Imagine even 1/4 of the plane doing that, and then ask me again why I'm in favour of keeping flight mode mandatory.

Dec 19, 2022

This is my #GitHubUnwrapped! Get your own: githubunwrapped.com

Spain hosts the largest group of Argentines in the world outside of Argentina. This is Barcelona right now. Mad love for their country. #FRAARG #ArgentinaVsFrance #FIFAWorldCup

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Toni Gabaldón

@toni_gabaldon

Dec 1, 2022

📢 EMBO postdoctoral grants call is out! As a former EMBO LTF I strongly recommend them. If you align with our research interests at

Fellowships, grants and career support – Postdoctoral Fellowships – EMBO

we are happy to consider welcoming an

@EMBO

LTF postdoc

embo.org

Supporting internationally mobile postdoctoral researchers in Europe and around the world

IRB Barcelona and 9 others

Today is the

hackathon / wikithon. We are all improving internal help guides and documentation that make our work easier. For lunch we had international delicacies made by us. Hard work means also great fun! (Pictures by

@ucielp

)

Patrick Van Dijck

@PatrickDijck

Nov 18, 2022

Very happy to be able to contribute to fight fungal infections in a collaboration with the labs of

@judithberman11

and

@mifridm

and all the collaborators of the

@PatrickDijck

lab, the strong input from

@CarolusHans

and with support from

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The results from the 14th JPIAMR call! It aims to improve the treatment of bacterial and fungal infections, to prevent the spread of resistance in humans, animals, or plants by improving drugs and plant protection agents. #OneHealth jpiamr.eu/calls/therapeu #EAAD #WAAW #WAAW2022

Cosa aspettarci da Italia – Sud Africa

Arrivano gli

. Come stanno? Come stiamo noi? A chi dobbiamo stare attenti? Scopritelo nel nostro nuovo articolo. #rugby #AutumnNationsSeries #ITAvRSA #italia #sudafrica #genova #rugbyunion #blog #carborugby

carborugby.com

Il 19 Novembre, a Genova, l’Italia si troverà davanti il Sud Africa per l’ultimo test match internazionale della finestra di Novembre. È impossibile che la mente non torni indietro a qu…

Nov 16, 2022

Great talk by Loren Williams at the IRB in Barcelona, on how ribosomes change over the tree of life while still preserving their key elements intact. #academia

@IRBBarcelona

#phd #postdoc #talk

@GeorgiaTech

Dr Moro's Island and 5 others

Uciel

@ucielp

Nov 2, 2022

PhD position (fully-funded) in my upcoming Computational RNA Biology lab to work on the evolution, structure and function of RNAs. chorosteckilab.github.io/assets/pdf/PhD More info at ChorosteckiLab.github.io Please RT! #phdpositions

Matteo Schiavinato (@schmat_90) • Instagram photo

Oct 19, 2022

Gabaldón group retreat 2022 - lots of good vibes, teambuilding, calvados, rugby tackles, and a very bad squid without garlic and parsley. Basically: all the good stuff. #academia #academics #postdoc #phd #research

instagram.com

Oct 18, 2022

Large group, big fun!

Back from two-days

retreat. Nice combination of work,forward looking, open discussions and lot of fun. I return with reloaded batteries and happy to work with such a nice group of excellent people.

Oct 12, 2022

La freccia al cielo di Gosens era per

@LaRiserva_pod

dopo l'ultima puntata.

Sep 27, 2022

Chi ha inventato la moda di andare in giro in ciabatte di gomma coi calzini di spugna?

Sep 23, 2022

Your PhD buddies when you become reviewer for a journal #AcademicChatter #postdoc #research

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Crick Science Entrepreneur Network (CSEN)

@csen_crick

Sep 22, 2022

Could biotechnology make our lives more sustainable for the environment? 🌎 Join us on 7th of October for a panel discussion with 5 inspiring science entrepreneurs pioneering #biosustainability innovation in the UK. Register by clicking on the link below!

eventbrite.co.uk

Future matters: Burning need for bio-sustainability

CSEN is thrilled to partner with Synbiobeta to host a panel discussion on sustainable biotech with leading start-ups in the field.

IRB Barcelona and 7 others

PCBakers

@BakersPCB

Sep 22, 2022

Thanks to everyone who came to the bake sale yesterday! 🥰🍰 The FINAL final total raised for

@babiesuganda

was €823.20, bringing our cumulative total so far to €3575.15. Huge thanks to

@MartaLoverul

who organized the event and brought delicious Ugandan coffee and tea! 🇺🇬❤️

Sep 22, 2022

Working from a Sandwichez since they cut electricity in my home. So this is where urban planners, lawyers, and marketing strategist gather daily. I've never been more up-to-date on what's up in these three fields, just by casually eavesdropping. #barcelona

AlfonsoValencia alfonsovalencia@mastodont.cat

@Alfons_Valencia

And after years of pandemic and work in isolation

@ECCBinfo

was a big party of friendship and science #ECCB2022

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gabaldonlab

At #eccb2022 there are several posters from us. Here

@MikiSchikora

thoroughly explaining #PersVade to an interested person. Hope he is “persVaded” and get to use the tool. genomebiology.biomedcentral.com/articles/10.11

Votare per il senato italiano è stato come scegliere cosa prendere fra i resti di un buffet dove son rimaste solo le foglie di insalata che stavano sotto ai tramezzini #ElezioniPolitiche2022

Felix Wascher

@flwasch

Presenting my work performed

@ICBboku

on genetic diversity in crops at #ECCB2022 Come and say hi if you are interested in plants, sequencing and ML!

Proud presenter of a tool to extract LOH blocks which only needs a BAM file, a reference FASTA file, and a VCF file. You should try it, it's called JLOH, and it will be public soon on github. #bioinformatics #ECCB2022

It may look like Venice in August but it's the #ECCB2022 poster session. Lots of interesting posters but not as many square meters sadly

It's poster session time at #ECCB2022, come visit me! #AcademicTwitter #AcademicChatter #postdoc

Great keynote talk by Ana Freitas at #ECCB2022 in Sitges. Why is data sitting in hospitals and not being used to improve our medical models? #AcademicTwitter #AcademicChatter

Sep 17, 2022

He's a 10 but would not stop talking about phylogenesis

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A very intense EMBO workshop #emboeuk22 learning a lot about Evolution and diversity, and meeting incredible people! Great experience!