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Prikvačeni tweet
Our lab is growing! Interested in multi-modal/spatial single-cell analysis? We are seeking applications for experimental and computational staff scientists until 2/15, and are always recruiting postdocs. More info at http://www.satijalab.org/join_contact . Just DM me a CV to apply, please RT!
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ZipSeq from the Krummel lab (
@UCSF@ImmunoX) prints spatially-patterned barcodes onto live cells within intact tissues. After dissociation and scRNA-seq, cells can be mapped to their original location!https://www.biorxiv.org/content/10.1101/2020.02.04.932988v1 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Rahul Satija proslijedio/la je Tweet
We're excited to release a
#scanpy update for the analysis and visualization of#spatialTranscriptomics data, focussing on@10xGenomics Visium and MERFISH, thx@g_palla1. Tutorial at https://nbviewer.jupyter.org/github/theislab/scanpy-tutorials/blob/master/analysis-visualization-spatial.ipynb … Support for different data types and integration with#scRNAseq soon!pic.twitter.com/SC6sYldpED
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Important work from
@NIHDirector carefully comparing sample preparation protocols for scRNA-seq. Identifies protocol-dependent biases in cell type recovery and gene expression for human pancreatic islets, but results likely extend to many primary tissues:https://academic.oup.com/biomethods/article/5/1/bpz019/5678780 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Thanks to everyone who tuned in for
#singlecellgenomicsday! Selected slides, video, and resources are now available at http://www.satijalab.org/scgd For those in a different time zone, we will rebroadcast the entire livestream next Thursday (2/6) at 9:30PM EST.Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Rahul Satija proslijedio/la je Tweet
Does single cell RNA-Seq predict gene dynamics? We just had to find out ... by lineage tracing ... in hematopoiesis. Introducing LARRY
. Awesome collaboration with Fernando Camargo and @AlejoFraticelli. Kudos@morris_lab for trailblazing this field!https://science.sciencemag.org/content/early/2020/01/22/science.aaw3381 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Rahul Satija proslijedio/la je Tweet
Our latest preprint, with the
@SolnicaKrezelL lab. High-resolution transcriptional and morphogenetic profiling of cells from micropatterned human embryonic stem cell gastruloid cultures...https://twitter.com/biorxivpreprint/status/1220425898454847489 …Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Livestream for our free single cell workshop starts tomorrow at 9:30AM EST. If you're watching online, you can tweet questions using
#singlecellgenomicsday, and we'll relay to presenters in the room. See you tomorrow! https://satijalab.org/scgd pic.twitter.com/YLoaFAqeCD
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Interested in single cell genomics but need help getting started? Check out the agenda for my lab's free workshop next Friday. Very excited that we will be livestreaming all talks with the support of
@cziscience! Please RT and spread the word! http://satijalab.org/scgdHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
If you're interested in who will be a future scientific leader, keep an eye on the PhD students who highlight, promote, and applaud the work of their competitors.
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Rahul Satija proslijedio/la je Tweet
Calling all neuro-students and early postdocs: Come join us in Bordeaux in June for three weeks of beautiful France and a lot of single-cell awesomeness!
@KharchenkoLab#twitterless Favereaux lab#cajal@FENSorg@karolinskainst@KarolinskaNpic.twitter.com/XmF7F5ba3Y
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Rahul Satija proslijedio/la je Tweet
Very excited to share our pgFARM study, which describes CRISPR/Cas9-based screening of ultraconserved poison exons during in vivo tumorigenesis! Great collaboration with
@aliceb_phd, just out in@NatureGenet: https://www.nature.com/articles/s41588-019-0555-z …pic.twitter.com/xgnaHpds63
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Rahul Satija proslijedio/la je Tweet
Scanpy 1.4.5 is out with an overhauled website and a long-overdue first tutorial on dataset integration. Most contributions from Scanpy core (
@trueflyingsheep,@ivirshup,@gokcen,@fidel_ramirez) with the "ingest" tool due to@koncopd. https://scanpy.readthedocs.io/en/latest/release-notes.html#version-1-4 …pic.twitter.com/gbFeLEDOA4
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Interested in statistical models for scRNA-seq? Happy holidays! Two papers in
@GenomeBiology: * GLM-PCA from@sandakano and@rafalab: https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1861-6 … * Our sctransform package (by Christoph Hafemeister) for normalization and variance stabilization:https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1874-1 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Ultra-high throughput scRNA-seq from Christoph Bock's lab! Combines combinatorial barcoding with droplet microfluidics to sequence >150,000 cells on a single
@10xGenomics lane:https://www.biorxiv.org/content/10.1101/2019.12.17.879304v1 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
We are excited to work on this problem as part of
@_hubmap and@humancellatlas! Special thanks to lead and co-authors@jennyerood@timoast@shazanfar@tbyanc and@aw_butler, and to@GraphicAnja for beautiful figures!Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Our perspective: "Towards a Common Coordinate Framework for the Human Body" is out today in
@CellCellPress! With the Regev Lab and@MarioniLab, we discuss challenges and opportunities for constructing, mapping, and querying a CCF:https://www.cell.com/cell/fulltext/S0092-8674(19)31275-9 …Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Rahul Satija proslijedio/la je Tweet
Our multi-omics atlas of mouse gastrulation at single-cell resolution is published today in
@nature! Again, a truly enjoyable collaborative work between the@ReikLab,@MarioniLab and@OliverStegle: https://www.nature.com/articles/s41586-019-1825-8 … See thread for a quick summary
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We’re excited to release a Seurat update with support for Spatial Transcriptomics data! Includes clustering, interactive visualization, and integration with scRNA-seq references. Check out our vignette on
@10xGenomics Visium data: https://satijalab.org/seurat/v3.1/spatial_vignette.html …pic.twitter.com/h13kfDnjKi
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The first window into this story came from scRNA-seq, which revealed genes that were overexpressed in pathogenic Th17 cells. But the real findings came from remarkable functional experiments to establish how Gpi1-loss selectively eliminates some cell types, but not others
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