Tessa Pierce, PhD

@saltyscientist

Marine biology, bioinformatics, climate change, and open science nerd. NSF postdoc in 's dib-lab at UCD. alum. Feminist. she/her

San Diego
Vrijeme pridruživanja: travanj 2010.

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  1. proslijedio/la je Tweet
    24. sij

    HIVE MIND: I'm searching for people who are great at talking about the history of climate change. Not the history of global temperatures - but rather policy decisions, or civilization level trends etc. I would love a RT to help me gather recs!

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  2. proslijedio/la je Tweet
    14. sij

    Come work with me! I don’t work on this project, but some great people like and do! If that’s not a dream team I don’t know what is.

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  3. 12. pro 2019.

    IMO snakemake wrappers are the best way to facilitate tool use in snakemake workflows, esp for tools that have different potential inputs and outputs. Check out my wrappers for transdecoder, plass, paladin, last aligner, hmmer, and infernal (alongside others!) in this release

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  4. proslijedio/la je Tweet
    11. pro 2019.

    Ahoy! dammit v1.2 is out and available on bioconda. It fixes several major bugs -- in particular, the 'query_name' KeyError that many folks were getting. Thanks to for contributions to this release!

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  5. proslijedio/la je Tweet
    4. stu 2019.

    Considering applying for some prof positions. Anyone want to send me their teaching philosophy and/or research statement so I can know what I'm doing? Also, any good bioinformatic courses I can build from?

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  6. 17. lis 2019.
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  7. 25. ruj 2019.

    what happens when a labmate hasn't read harry potter! Shall we submit to ?

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  8. proslijedio/la je Tweet
    30. srp 2019.

    Now remember this truism to make all your dreams come true: conda-forge has higher priority than bioconda. conda-forge has higher priority than bioconda...

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  9. proslijedio/la je Tweet
    12. srp 2019.

    For the last 2 weeks I had the privilege of attending . The training was amazing, but the best part was the open, inclusive, collaborative and enthusiastic nature of the people. A fantastic experience!

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  10. 4. srp 2019.

    Large scale sequence comparisons with sourmash is now up ! We aimed for an overview of current functionality w/practical use cases to get started. Review and comments welcome Great working w/ !

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  11. 2. srp 2019.

    snakemake question - does anyone know how to submit a number of slurm cluster jobs at once using the snakemake python api? I'm pretty new to slurm, but it seems straightforward (using cores and immediate_submit) AND YET I can't get it to submit more than 1 job at a time

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  12. proslijedio/la je Tweet
    28. lip 2019.

    Thrilled to share this describing 4 new Fundulus killifish PromethION genome assemblies using reads for polishing! With

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  13. 14. lip 2019.

    Is it possible to parallelize FTP downloads in snakemake when using the snakemake.remote.FTP (or any builtin remote) object? Clean example (from someone else asking the same q) here:

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  14. 29. svi 2019.

    When is going to realize their mile-long receipts aren't funny and are actually extremely wasteful? I bought TWO ITEMS.

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  15. proslijedio/la je Tweet

    Thread alert! Hopping mad about dwindling abortion access? Welcome, we've been waiting for you. Here are some ways you can show up today in your state -- please settle in for the long haul. We need you now, and we need you for the weeks, months, and years to come.

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  16. proslijedio/la je Tweet

    If you’re in your mid-30s or younger, the connection between fossil fuels and climate change has been studied, plotted, and well understood for your entire life. And the oil companies have been knowingly warming the planet every day you’ve been alive, and getting rich off it.

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  17. proslijedio/la je Tweet
    11. svi 2019.

    I wrote a tutorial on how to use kofamscan on the command line: I'm so pleased to be able to use this tool independent of the web interface. No more 300mb cutoffs + email submissions!

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  18. proslijedio/la je Tweet

    The market cannot solve climate change by itself. Governments must act

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  19. proslijedio/la je Tweet
    18. tra 2019.

    While you wait for the Mueller report, take a look at my story on sexism in academic science. Some incredible scientists spent a lot of time sharing their stories with me ‘I Want What My Male Colleague Has, and That Will Cost a Few Million Dollars’

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  20. proslijedio/la je Tweet
    11. tra 2019.

    Hello tweeps! I have a new blog post about my latest code adventures. It describes using cppyy and CMake to automatically generate and package Python bindings for C++ packages. cppyy is dark magic!

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