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preibischs's profile
Stephan Preibisch
Stephan Preibisch
Stephan Preibisch
@preibischs

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Stephan Preibisch

@preibischs

Group Leader at the Berlin Institute for Medical Systems Biology. Keywords: Lightsheet Microscopy, Transcription, Computer Vision, C.elegans, Fiji, ImgLib2

Berlin, Germany
preibisch.net
Joined July 2009

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    Stephan Preibisch‏ @preibischs Jun 18

    Stephan Preibisch Retweeted CZI Science

    Finally a funding opportunity that really understands how open-source software works and what it needs to function properly, awesome!https://twitter.com/cziscience/status/1141027713043406848 …

    Stephan Preibisch added,

    CZI ScienceVerified account @cziscience
    Our #opensource software call for applications is now open! Special thanks to everyone who helped us develop this program for their advice + insight: https://bit.ly/2YcGRNL  pic.twitter.com/stIB2QCB4k
    Show this thread
    12:16 PM - 18 Jun 2019
    • 5 Retweets
    • 15 Likes
    • Digital Naturalism Chico Venancio Dario Taraborelli Alexey Guzey Nicholas Sofroniew Simone Reber jeremy freeman Francesco Pampaloni Reto Fiolka
    2 replies 5 retweets 15 likes
      1. New conversation
      2. Stephan Janosch‏ @StephanJanosch Jun 18
        Replying to @preibischs

        Hi! A question of interest: Did you understand #nfdi (http://nfdi.dfg.de ) as an opportunity to promote research software (e.g. @FijiSc ) from project to infrastructure incl. maintanence? I often realize, that NFDI ist not enough known/understood.

        1 reply 0 retweets 0 likes
      3. Stephan Preibisch‏ @preibischs Jun 19
        Replying to @StephanJanosch @FijiSc

        I know about it, but it is limited to German consortia ... and it requires consortia, which means support for large projects. It is of course great that #nfdi exists, but it is not really supporting individual open-source projects ... to, for example, write documentation

        3 replies 0 retweets 1 like
      4. Pavel Tomancak‏ @PavelTomancak Jun 23
        Replying to @preibischs @StephanJanosch @FijiSc

        Stephan, how much will you be able to do with one year of #czi funding? If you hire new people you loose time training them. For existing people you need to take them off current funding and then switch back. It is a good initiative but it has its flaws.

        2 replies 0 retweets 3 likes
      5. Stephan Preibisch‏ @preibischs Jun 23
        Replying to @PavelTomancak @StephanJanosch @FijiSc

        It is a niche, but an important one. E.g. It allows to really finish an open source project after its published - a wrap up postdoc year. Or you can pay somebody 25% or 50% of the salary to write documentation or do support ... while, importantly, it all looks good on the CV.

        1 reply 1 retweet 1 like
      6. Pavel Tomancak‏ @PavelTomancak Jun 23
        Replying to @preibischs @StephanJanosch @FijiSc

        Good point. There are probably hundreds of such projects in life sciences alone. So this will be competitive. For the big projects this is less useful because of lack of continuity. I think it would be irresponsible to hire someone on one year contract in @FijiSc.

        1 reply 0 retweets 3 likes
      7. Juan Nunez-Iglesias‏ @jnuneziglesias Jun 23
        Replying to @PavelTomancak @preibischs and

        Do note that it is a pilot project and they are well aware of these issues. The funding is renewable after 1y and the entire program is up for revision/improvement after unspecified time. Also note that most countries don’t have national support of any kind for open source.

        1 reply 0 retweets 5 likes
      8. Pavel Tomancak‏ @PavelTomancak Jun 24
        Replying to @jnuneziglesias @preibischs and

        I get all that. In its current form it is useful to fund projects not people. I learned that as a responsible PI I cannot offer developers a 1-year contract without having a clear plan for sustainability of the position. Unless its a wrap up like @preibischs mentioned.

        0 replies 0 retweets 1 like
      9. End of conversation
      1. New conversation
      2. Dr. Greg‏ @DrGreg09512106 Jun 24
        Replying to @preibischs

        By 'what it needs to function properly' do you mean a more diverse community?

        1 reply 0 retweets 0 likes
      3. Stephan Preibisch‏ @preibischs Jun 25
        Replying to @DrGreg09512106

        Science offers (to the best of my knowledge) no direct incentives to work on improvement, refinement, integration or documentation of open-source software after it's published ... such a call can therefore make open-source software more sustainable and useful for everyone

        1 reply 0 retweets 1 like
      4. Dr. Greg‏ @DrGreg09512106 Jun 25
        Replying to @preibischs

        I agree that work on improvement, refinement, integration or documentation is valuable, but the word 'everyone' makes me think of this line and the deep flaw in the all lives matter thinking: https://www.vox.com/2016/2/25/11116366/facebook-all-lives-matter …pic.twitter.com/Y4qjs0TJPN

        0 replies 0 retweets 0 likes
      5. End of conversation

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