Why do we still need to submit horrible looking manuscripts (double spacing, figs separately) to journals when we build them in LaTeX? 

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I have LaTeX custom fonts nailed — useful for CV (to look like my website) but how relevant here? https://github.com/oliviaguest/cv
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I don’t write anything in raw latex, sorry. Templates only.
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I actually have no idea what you are talking about you've lost me.
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I write in Rmarkdown. That gets converted, using pandoc, into a PDF, through XeLaTeX, which generates figures separately
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That's great for you but I don't think this is relevant to me at all.
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