Rob Patro

@nomad421

Assistant Professor @ Stony Brook University. I ♥ science & have a serious interest in (compiled, statically-typed) programming languages! Views are my own.

Vrijeme pridruživanja: kolovoz 2008.

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  1. proslijedio/la je Tweet
    prije 17 sati

    I welcome our new rust overlords… :)

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  2. proslijedio/la je Tweet
    1. velj

    Keeping my eye out for the Feb 4 reveal, but a very good result for already!

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  3. proslijedio/la je Tweet
    30. sij

    1/7 Congrats to , , my co-conspirator and especially the 🌟 of the show for making the very first research paper in 's new subjournal NAR Cancer happen!

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  4. proslijedio/la je Tweet
    30. sij
    Odgovor korisniku/ci

    Oh yes, this is just the first of many potential applications. The performance improvement grows with the size of the data, so are keen to apply to metagenomics and pangenomics

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  5. proslijedio/la je Tweet
    30. sij

    Working on multi-threading support for SQANTI2. Should be out in a day or two!

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  6. proslijedio/la je Tweet
    30. sij

    Introducing Sapling: Accelerating Suffix Array Queries with Learned Data Models with and .

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  7. proslijedio/la je Tweet
    30. sij

    This may be my last tweet for a while about resources, but an important one for colleagues. Please R/T! Here are the CoV sequences from Wuhan and US isolates:

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  8. 30. sij
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  9. proslijedio/la je Tweet
    30. sij

    My department just opened a search for a junior faculty member with interest in applying machine learning to the diagnosis and treatment of disease, broadly defined. More information:

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  10. proslijedio/la je Tweet
    27. sij

    Spoiler: it probably won't.

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  11. proslijedio/la je Tweet
    27. sij

    Conterminator terminates contamination in genomes. and me report over 114K/2M contaminations in RefSeq/GenBank and two unexpected ones in GRCH38 alt. scaffold and C. elegans ref. genome. Preprint: Code:

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  12. proslijedio/la je Tweet
    26. sij
    Odgovor korisniku/ci

    After 10+ years of writing Python, I love that Rust is forcing me to think in a very different way. I also appreciate rust-bio, which I’ve been using for examples of idiomatic Rust related to my problem domain.

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  13. proslijedio/la je Tweet
    24. sij

    Excitement, nervousness prepping new course on Sketching and Indexing for Sequences. Already spilled coffee on Navarro (sorry, Gonzalo).

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  14. proslijedio/la je Tweet
    22. sij

    Theory part of our work with Kristoffer Sahlin out:

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  15. proslijedio/la je Tweet
    15. sij

    computational biology team is hiring (paid) graduate student interns for this summer! This is a great program and special opportunity to train in industry to develop cutting edge technologies. . Please RT!

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  16. proslijedio/la je Tweet
    19. sij

    Nice little writeup on Saket Navlakha, who we were delighted to recruit recently to the Simons Center for Quantitative Biology.

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  17. proslijedio/la je Tweet
    19. sij

    The preprint for my first first-author paper, which will also be presented at RECOMB 2020, is now on biorXiv! 1/n

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  18. proslijedio/la je Tweet
    14. sij

    from my group developed hifiasm, a new assembler that preserves local phasing. Human asm in 1/2 day. Tested on non-humans. Comparable asm quality to others. Features in plan: consistent primary asm & global phasing. Feedback welcomed!

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  19. proslijedio/la je Tweet
    15. sij

    Check out the final version in Genome Research of our single cell RNA-seq profiling of lung, kidney, and spleen in aging mice!

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  20. proslijedio/la je Tweet
    16. sij

    Looking forward to this, in 1 short hour. Already stimulated by the pleasant, brisk walk across the campus. Come one, come all!

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