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Prikvačeni tweet
It is out! Check out our paper, "Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei" in
@SciReports!#AMF#assemblomics#genomicshttps://www.nature.com/articles/s41598-020-58025-3 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Mercè Montoliu Nerín proslijedio/la je Tweet
Ahnesjö et al. just published "Considering Gender-Biased Assumptions in Evolutionary Biology", including a set of guidelines! Give it a read! Link: https://link.springer.com/article/10.1007%2Fs11692-020-09492-z …
#SystBioPaper#Gender#sciencepic.twitter.com/5ihpQfj8NH
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Mercè Montoliu Nerín proslijedio/la je Tweet
Excited to see our fungal
#MeioticDrive paper on bioRxiv! With@jesvedberg,@H_S_Johannesson and the Hammond lab, we show that spore killing (sk-1) in#Neurospora sitophila is caused by a gene that is introgressed from another species. https://www.biorxiv.org/content/10.1101/2020.01.29.923946v1 …pic.twitter.com/dR3Z4bMuhK
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Mercè Montoliu Nerín proslijedio/la je Tweet
Fungal
#mycelium under microscope. Given the right conditions#fungi can prolong themselves indefinitely. A fragment can regenerate a whole#network meaning that a fungal 'individual'—if you’re brave enough to use that word—is potentially#immortal. .#fungus .
©@weeblackboxpic.twitter.com/G2zR3BKPyhHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Won the bingo of
#wpsg2020 and got the perfect gift to celebrate with the@RoslingLab our recent paper on Monday!!pic.twitter.com/bAwOrTztn3
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Mercè Montoliu Nerín proslijedio/la je Tweet
Happy to see my design printed on the t shirt
#wpsg2020pic.twitter.com/nZji5bIosx
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Mercè Montoliu Nerín proslijedio/la je Tweet
Look at all those
#Fungi in the#Emoji2020! We've got Endophytes. That lung might have some#Aspergillus. That log is probably loaded with saprophytic fungi. They're EVERYWHERE!#FungiEverywherehttps://twitter.com/Emojipedia/status/1222615557524115459 …
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Mercè Montoliu Nerín proslijedio/la je Tweet
Read more about our workflow for genome sequencing from single nuclei.https://www.mynewsdesk.com/uk/uu/pressreleases/novel-method-for-reading-complete-genomes-from-limited-amounts-of-biological-material-2965726?utm_campaign=send_list …
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Mercè Montoliu Nerín proslijedio/la je Tweet
Genome assemblies from single nuclei of unculturable fungi and other microbes. Combining WGA, Illumina data from individual nuclei and long-read data from a small pool of nuclei.https://www.nature.com/articles/s41598-020-58025-3 …
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Mercè Montoliu Nerín proslijedio/la je Tweet
Finally out!! Check out our paper 'Gene gain and loss across the metazoan tree of life' by
@toni_gabaldon and yours truly just published in@NatureEcoEvo 1/nhttps://www.nature.com/articles/s41559-019-1069-x …Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
To finish, I just wanted to add my own version of the last meme trend in internet. For everyone who deals with whole genome assemblies and suffers with their never easy problems!
#assemblomics 9/9pic.twitter.com/SLd7M2S1pL
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For developing the different assembly pipelines that could deal with the coverage bias of the data, we counted with the support of the bioinformatics team from
@NBISwe, Manfred Grabherr,@vekutschera, and@quiestrho. 8/9pic.twitter.com/I64jtYffK5
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Conclussion? There is no such thing as the "perfect" assembly, but a set of final assemblies that represent each some types of genomic content in a better way, and can equally be used in different downstream analyses. 7/9
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But, as we all know... "one does not simply assemble a genome". A total of 396 whole genome assemblies from the same isolate were generated, and included in the final publication, in order to find the "perfect" de novo assembly.
#assemblomics#genomeassembly 6/9pic.twitter.com/YjA3HStSOP
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Single nuclei were sequenced using
@illumina, at@ngisweden; and groups of nuclei with@nanopore, thanks to the hard work of@barbi_ellis. This gave us a good set of data to combine and produce a de novo assembly.#DNAsequencing#minion#illumina 5/9pic.twitter.com/tSl0mbUOxa
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Thanks to Claudia Bergin, from the single cell facility of
@scilifelab, we managed to sort individual nuclei using a FACS, and whole genome amplified their DNA with MDA.#singlecell 4/9pic.twitter.com/Cx3RflmCWv
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This is the case of arbuscular mycorrhizal fungi, which are obligate symbionts to plant roots, and only produce micrometer-sized multinucleate spores as their biggest isolable structure.
#amf#mycorrhizae#fungi 3/9pic.twitter.com/Jd2yqzhPiN
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Sequencing techniques have been broadly developed, but still today, we are limited by the amount and quality of DNA. This affects the study of a big part of Earth's biodiversity, that cannot be grown in lab conditions, or form complex close interactions with other organisms. 2/9
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In a short series of tweets I will briefly explain what we did in our recently published paper "Building de novo reference genome assemblies of complex eukaryotic microorganisms from single nuclei" in
@SciReports.@RoslingLab 1/9pic.twitter.com/9a6wycuGqu
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Primero de una serie de artículos sobre
#23andme, en@Naukas_com, por@LluisMontoliu. Esta vez centrándose en cómo llegó a hacerse el análisis (aquí la culpable
), y en los resultados que ofrecen sobre ancestros genéticos.https://twitter.com/LluisMontoliu/status/1221752078399430658 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi
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Now approved: 117 new emojis for 2020