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Prikvačeni tweet
Two weeks ago, the first paper from my postdoc with
@bejcal (and in collaboration with@AmyDWillis) was published in@eLife at http://doi.org/10.7554/eLife.46923 …. It is a long one, so here is a summary!pic.twitter.com/ACs1QZTiFp
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Mike McLaren proslijedio/la je Tweet
Since I first read it, I've never stopped thinking about "The Natural Selection of Bad Science" https://royalsocietypublishing.org/doi/full/10.1098/rsos.160384 … The paper demonstrates better than any other how science reform is more about restructuring incentives than winning logical arguments
@psmaldino@rlmcelreathpic.twitter.com/qvaU6mNx9g
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Mike McLaren proslijedio/la je Tweet
Sharing my step-by-step but concise notes on how to submit amplicon sequences to NCBI's SRA, in case it's helpful to others:https://docs.google.com/document/d/1KQp7JbiyckPCNk2ggHYYLMsjS_-uKHavyQPj2AJZfXk/edit?usp=sharing …
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I'm still honoring "stringsAsFactors" government of tax strings -> factors to match phyloseq's behavior, but considering forcing the user to ask for factor conversion explicitly in next version. Would love to hear thoughts on this.
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Speedyseq v0.1.1 now gives psmelt() another 2X speedup (~ 200X faster than phyloseq) https://github.com/mikemc/speedyseq …
#rstats#microbiomePrikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Non-adaptive explanations I've imagined include evolved dependence of host on the commensal, or an immune against all microbes the commensals have evolved resistance to
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Reviews I've seen describe the "how" but seem uninterested in the "why". Would appreciate references to any discussion on this point!
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Why (in an evolutionary sense) would a host's response to _pathogens_ depend on the presence of _commensals_ in this way?
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or showing that commensals or their products are needed for development of the immune system or other pathogen defense
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Many studies describe cases where a host immune response against a pathogen is triggered by a commensal microbe
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Thinking maybe someone has done this via WGS metagenome annotation
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Has anyone come across or attempted an estimate of the number of distinct microbe-microbe weapons systems in a single plant or human
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Mike McLaren proslijedio/la je Tweet
Happy 2020! With the holidays behind us, wanted to highlight a few key take-aways from our preprint: https://www.biorxiv.org/content/10.1101/2019.12.21.886093v1 …. Our study focuses on a basic question: how do gut microbial communities respond to routine antibiotic treatments?
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includes a nice shout out to the Callahan lab too :)
@bejcal@hannalbermanhttps://twitter.com/dror_barak/status/1207221752146857984 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Mike McLaren proslijedio/la je Tweet
So happy to see this paper led by
@JenniferRocca1 out in@ESAEcology! We show that rare microbial taxa emerge during community coalescence and drive the maintenance of microbial functions and diversity. With@DrBioGC@JPWrightEcology@Alex_Washburnehttps://esajournals.onlinelibrary.wiley.com/doi/10.1002/ecy.2956 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Mike McLaren proslijedio/la je Tweet
Finally it is done... SILVA 138 SSU is released. LSU will follow in Spring 2020. Please note: The Treeviewer and SILVAngs are still on SILVA 132. Updates are planned for January 2020. Many thanks for your patience, the next release will come faster
. The SILVA Teampic.twitter.com/Ca2PMrTl8c
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Mike McLaren proslijedio/la je Tweet
This episode of the show is muy muy bueno: "…the interview, at over 4.5 hours long, outlines each current answer to the mystery of consciousness, what it has going for it, and its likely ethical implications."https://80000hours.org/podcast/episodes/david-chalmers-nature-ethics-consciousness/ …
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Mike McLaren proslijedio/la je Tweet
It's a beautiful Sunday morning in Seattle 16S profiling provides relative abundance of reads attributed to taxa, which is not the same as the relative abundance of the taxa themselves.
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Mike McLaren proslijedio/la je Tweet
Introducing... the Stat Div Lab blog! Our first post: "Microbiome data analysis 101" -- basic principles for reasonable analysis. Enjoy!



http://statisticaldiversitylab.com/blog Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi
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