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I am a Maize-Meeting-Abstract-Editing Machine! Holy cow that was a lot today. Mahalo to my lab and collaborators for churning these out!
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Pretty amazing result from the Dawe Lab and we enjoyed collaborating...telomere to telomere with no gaps for two chromosomes and 7/10 functional centromeres traversed without gaps. We also now know the structure of the Ab10 haplotype.https://twitter.com/corncolors/status/1217797345527631872 …
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Maggie Woodhouse from
@MaizeGDB describing the massive overhaul of the website and database with the recent publication of nearly 50 maize genomes (including#NAMgenomes).#PAG2020Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
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Matthew Hufford proslijedio/la je Tweet
I'm giving my first ever scientific talk at
#PAGXXVIII on how to use the#NAMgenomes to test classical questions about heterosis. Come see it Tuesday 11:50AM in the Terrace Room of the Handlery Hotel!Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Matthew Hufford proslijedio/la je Tweet
Maize V5 and a lot more... Proud and excited to be part of this effort! Check out the NAM project sites: https://nam-genomes.org/ and https://maizegdb.org/NAM_project https://twitter.com/corncolors/status/1215318445945958402 …
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Matthew Hufford proslijedio/la je Tweet
The data from this project is now available at MaizeGDB including 26 genome pages, ~1 million gene models, 134 BLAST targets, and JBrowse instances for each genome with over 1,000 tracks of data.
@corncolors@mbhufford@GrameneDatabase@HirschCandice https://www.maizegdb.org/NAM_project https://twitter.com/corncolors/status/1215318445945958402 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
This has been a monumental but really fun effort due to an excellent team. Thanks to folks at UGA and CSHL and our group at ISU (Maggie Woodhouse,
@ArunSeetharam,@SigmaFacto,@NANCYMANCHANDA1,@snodgrasshopper,@DavidEHufnagel, Sarah Pedersen, Michael Syring). Preprint soon!https://twitter.com/corncolors/status/1215318445945958402 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Matthew Hufford proslijedio/la je Tweet
Our pre-print "Maximizing prediction of orphan genes in assembled genomes" is out today! "Orphan genes" share no sequence homology to genes in closely related genomes.https://www.biorxiv.org/content/10.1101/2019.12.17.880294v1 …
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Our TE annotation manuscript is out today in Genome Biology. We’ve identified the best-performing methods and created a pipeline for comprehensive annotation. Congrats to
@SigmaFacto who did the heavy lifting and thanks to collaborators.https://twitter.com/GenomeBiology/status/1206571138584850433 …
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Matthew Hufford proslijedio/la je Tweet
Outstanding postdoc opportunity at UofMinn. 2 years of funding + $5k/year in research expenses. Applications due Feb 3, 2020! https://cbs.umn.edu/blogs/cbs-connect/application-open-2020-cohort-grand-challenges-biology-postdoctoral-program …
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Such a pleasure to work with talented undergrads like
@chase_krug at@IowaStateU. Chase describes how his appreciation of the importance of agricultural biodiversity has grown through participation in the@WorldFoodPrize program. Check out his blog post! https://www.worldfoodprize.org/index.cfm/88533/18917/importance_of_protecting_the_worlds_agricultural_genetic_diversity …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
A piece of advice that
@JonathanFWendel gave me years ago that’s stuck with me: during talks the focus should be empathy for your audience, which ensures 1) targeting information at the right level and 2) calms nerves because it’s about their understanding, not your performance.Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Current Status (Sorry SysAdmins, we really are trying to be good!
)pic.twitter.com/PPdr5AJlXw
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Matthew Hufford proslijedio/la je Tweet
Gene regulatory effects of a large chromosomal inversion in highland maizehttps://www.biorxiv.org/content/10.1101/861583v1 …
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Long-read and scaffolding technology have matured and are more economical. Our study of their application in a large, complex genome can be a guide as they are applied more broadly. Exciting to look forward to the Biology enabled by 10’s and 100’s of de novo genomes per species.
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This study helped guide assembly of the 26 founder lines of the maize NAM, which will be released in the coming months, was led by my postdoc
@SigmaFacto (co-advised with@HirschCandice) and is in collaboration with the groups of@warelab and@corncolors.Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
We downsampled a high-depth PacBio dataset from 20-75x coverage and to read length N50 from 11-21kb, assembled subsets, scaffolded with a Bionano optical map, and characterized how fully various genomic elements were captured with each assembly of this complex genome.
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The preprint is up for our long-read genome assembly benchmarking study for the tropical maize line NC358. https://www.biorxiv.org/content/early/2019/11/29/858365.full.pdf …
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