Martin Weigert

@martweig

math, software, microscopes

EPFL, Lausanne, Switzerland
Vrijeme pridruživanja: kolovoz 2015.

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  1. Prikvačeni tweet
    14. kol 2019.

    Want to detect and segment densely packed nuclei in noisy microscopy stacks? Then have a look at StarDist, which we just extended to 3D! Paper: Code:

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  2. proslijedio/la je Tweet
    3. velj

    Releasing , a generalist algorithm for cellular segmentation. Try it now directly on the website , install the code package , read the preprint or watch the talk .

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  3. proslijedio/la je Tweet

    Happy to share (fully OA) a Perspective on SciPy 1.0 for scientific computing in Python.

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  4. proslijedio/la je Tweet
    3. velj

    Real-time twitter to conference feedback data transfer between and . Can't be more fresh than this! A great highlight on the international impact of . CC

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  5. proslijedio/la je Tweet
    3. velj

    This year, the BIOP has joined forces with & to offer the 4th, relocated version of ZIDAS: SwitZerland's Image and Data Analysis School. Please retweet, promote and consider applying! 📢🎉

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  6. proslijedio/la je Tweet
    2. velj

    I mean come on, I spent years working with IHC slides and developing segmentation methods and then you guys just come out with this at the press of a button?!

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  7. proslijedio/la je Tweet
    22. sij

    PatchPerPix for Instance Segmentation. Peter Hirsch, Lisa Mais, and Dagmar Kainmueller

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  8. 10. sij

    Thanks to the heroic efforts of there is now a Fiji plugin of StarDist that allows to apply trained models! Check it out at

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  9. proslijedio/la je Tweet
    8. sij

    Interesting short piece in ⁦⁩ on . Low-carbon, virtual science conference tries to recreate social buzz

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  10. proslijedio/la je Tweet
    8. sij

    The XRM scan started yesterday on our Zeiss 520 Versa, using the 20x objective (0.6um voxel res), so it still counts for . A soybean seed shortly after pollination.

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  11. proslijedio/la je Tweet
    8. sij

    Great talk by , showing all details about our latest ISBI paper (accepted the day before yesterday). I‘m super proud, the talk was delivered super well!!! Check out the preprint, check out GitHub!

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  12. proslijedio/la je Tweet
    20. pro 2019.

    We are hiring: An exciting opportunity to work in between my team and the Keller lab at to develop algorithms and software for the next generation of light-sheet microscopes! Apply here:

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  13. proslijedio/la je Tweet
    13. pro 2019.

    Automatic prediction of synaptic links in a whole Drosophila brain: Read about 's method in our preprint, result of a fruit(fly)ful collaboration with the labs of , , , and !

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  14. 9. pro 2019.
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  15. proslijedio/la je Tweet
    8. pro 2019.

    Our baby is staring to take shape =)... watch this space

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  16. 5. pro 2019.

    Great write-up! And amazing to see the speed of development and growth of functionality. rocks! :)

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  17. 3. pro 2019.

    Image based cell classification and sorting at 100 cells/s - pretty cool!

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  18. proslijedio/la je Tweet
    26. stu 2019.

    Janelia researchers are developing innovative microscopes that can image big samples at high resolution. This Nature feature highlights work from the labs of Philipp Keller and Karel Svoboda.

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  19. 22. stu 2019.

    Sweet! The official bm3d version is now available on python! No more writing wrappers yourself, but pip install bm3d :)

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  20. 18. stu 2019.
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  21. proslijedio/la je Tweet
    24. lis 2019.

    Our paper on how to use lifted Multicuts to improve segmentation for microscopy imaging has been published: Thanks to everyone who has helped in putting this together!

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