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  1. proslijedio/la je Tweet
    prije 13 sati
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  2. proslijedio/la je Tweet
    30. sij

    My department just opened a search for a junior faculty member with interest in applying machine learning to the diagnosis and treatment of disease, broadly defined. More information:

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  3. proslijedio/la je Tweet
    27. sij

    HG002 data release from . HiFi, CLR, PromethION, GridION, Hi-C, Strand-seq, opmaps... CC0-licensed. Benchmarking to inform production sequencing recipe

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  4. proslijedio/la je Tweet
    23. sij

    BlastFrost: Fast querying of 100,000s of bacterial genomes in Bifrost graphs

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  5. proslijedio/la je Tweet
    23. sij

    AStarix: Fast and Optimal Sequence-to-Graph Alignment

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  6. proslijedio/la je Tweet
    18. sij
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  7. proslijedio/la je Tweet
    17. sij

    mosaicFlye - a short-read veteran's take on long-read assembly :) Will be also presented at RECOMB 2020!

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  8. proslijedio/la je Tweet
    14. sij
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  9. proslijedio/la je Tweet
    13. sij

    The Eukaryotic Annotation Pipeline has switched it's aligner from splign to

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  10. proslijedio/la je Tweet

    If you’re tired of scrolling don’t click this😲 🐟🐬🐠🐋🦈

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  11. 11. sij

    Reading . Take home msg: don't use --clip-semialigned with the Isaac aligner. It is well known that for short reads, local alignment increases ref bias (that is why bwa-mem has end-bonus as a remedy). This option is much worse.

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  12. proslijedio/la je Tweet
    29. pro 2019.

    A haplotype-aware de novo assembly of related individuals using pedigree sequence graph — Bioinformatics journal By Shilpa Garg, John Aach, , , and :

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  13. proslijedio/la je Tweet
    19. pro 2019.

    Excited to announce that I will be co-organizing the CSHA Conference on Computational Biology of the Genome meeting at Suzhou China, 6/29-7/3, 2020. With , Jackie Han and Nick Luscombe. . Speakers will be anounced shortly. Pls RT.

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  14. proslijedio/la je Tweet
    18. pro 2019.

    We are soon adding a third tenure track position. This one on clinical trials research. If you have PhD in Biostatistics or related field and are interested in using your skills and creativity to help improve the way we evaluate cancer treatment, please consider applying.

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  15. proslijedio/la je Tweet

    Ruan and Li report wtdbg2, a genome assembler that achieves comparable contiguity and accuracy to existing tools using long-read sequencing data, and is fast especially for large genomes.

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  16. proslijedio/la je Tweet
    6. pro 2019.

    Data structures based on k-mers for querying large collections of sequencing datasets

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  17. proslijedio/la je Tweet
    2. pro 2019.

    Phase II of the program to study 3D organization of the nucleus in space and time has launched. Visit to read the 4 new RFAs! Datasets, software, protocols, & reagents from Phase I are publicly available at .

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  18. proslijedio/la je Tweet
    6. pro 2019.

    The long awaited release of 1.10 of Samtools, BCFtools and HTSlib is now available from the GitHub. See for links to tarballs and release notes.

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  19. proslijedio/la je Tweet
    4. pro 2019.

    Hi genomics community! I recently started my own group at UTSW. We are looking for postdoc and students interested in machine learning and genomics to join us in our adventures in new frontiers! Please RT or forward to any potential interested candidates

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  20. proslijedio/la je Tweet
    2. pro 2019.

    MAtCHap: an ultra fast algorithm for solving the single individual haplotype assembly problem

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