Kristoffer Sahlin

@krsahlin

Assistant Professor at the Department of Mathematics at Stockholm University and a Scilifelab Fellow. Algorithms modeling, genomics, transcriptomics.

Stockholm
Vrijeme pridruživanja: srpanj 2012.

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  1. Prikvačeni tweet
    11. sij

    Together with Philip L James @dan_turnez and , we developed a method to correct cDNA transcriptome reads without reference. We achieve an accuracy of 98.7-99.5%.() 1/5

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  2. proslijedio/la je Tweet
    23. sij

    Having fun clustering and error-correcting long cDNA-reads with and and admiring the clusters in . This cluster has 14k reads. Pretty neat.

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  3. proslijedio/la je Tweet
    23. sij

    Pre-print on the evolution of great ape Y chromosomes, by , , and other colleagues & friends from the & group. Great work, all! 🦍🦧

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  4. 22. sij

    Excellent collaboration during my short postdoc in the algorithm-and-data-structure wizard ’s lab. Happy that I went there and learned a lot in such a short time.

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  5. proslijedio/la je Tweet
    22. sij

    Theory part of our work with Kristoffer Sahlin out:

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  6. proslijedio/la je Tweet
    14. sij

    We are looking for a junior (wet-lab) and a computational postdoc to join our team studying metabolism Research Assistant (8th Feb): Computational postdoc (29th Feb): Please RT

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  7. proslijedio/la je Tweet
    13. sij

    Only, one week left until the RECOMB-Seq 2020 paper submission deadline (Jan. 20): !

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  8. proslijedio/la je Tweet
    13. sij

    I wanted to add that IsONcorrect, our error correction tool for cDNA transcriptome data, is (hopefully...) easy to install with Conda:

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  9. proslijedio/la je Tweet
    11. sij

    Finally, an RNA error correction method for long reads is out!

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  10. 11. sij

    We designed an algorithm to correct reads on gene level using the fact that reads share parts of their sequence (e.g., from splicing). We show that this makes accurate error-correction possible even of reads from very low abundant transcripts. 5/5

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  11. 11. sij

    There are genomic error correction tools, but a recent study showed that they are not well suited for transcriptomic long read correction (). 4/5

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  12. 11. sij

    Reference free correction is useful if no (or low-quality) genome assembly, but also if "high quality" genome is present not to bias correction w.r.t. genome and misalignments (genome alignment of long transcriptomic reads is not perfect; separate study coming soon). 3/5

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  13. 11. sij

    Software and documentation available here: 2/5

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  14. proslijedio/la je Tweet
    8. sij
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  15. 20. pro 2019.

    I am happy to announce that as of January 2020 I will be joining the Department of Mathematics at as an Assistant Professor and as a Fellow at . Back in Sweden after 4+ years🌲

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  16. proslijedio/la je Tweet
    10. pro 2019.

    The CfP is out : . The paper submission deadline is Jan. 13th. Submit your work and join us in Padova for the 10th annual RECOMB-seq meeting!

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  17. proslijedio/la je Tweet
    19. stu 2019.
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  18. proslijedio/la je Tweet
    17. stu 2019.

    "Journal club"-style notes on Wheeler Graphs:

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  19. proslijedio/la je Tweet
    11. stu 2019.

    Linear-time string indexing and analysis in small space. Accepted to ACM TALG. 52 pages, featuring a DAG of dependencies between Lemmas and Theorems. New standard created. Preprint:

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  20. proslijedio/la je Tweet
    15. lis 2019.

    What got me the most excited about the 3.8 release: > multiprocessing can now use shared memory segments to avoid pickling costs between processes FINALLY!

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