Konstantinos Kyriakidis

@kokyriakidis

Undergraduate Pharmacy Student and upcoming Bioinformatician specialized in Pharmacogenomics

Thessaloniki, Greece
Vrijeme pridruživanja: studeni 2010.

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  1. proslijedio/la je Tweet
    prije 6 sati

    Introducing "Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED" with et al. Does selective enrichment and depletion of any targeted genomic region purely in software for sequencing.

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  2. proslijedio/la je Tweet
    prije 6 sati

    if knit to pdf, add urlcolor:blue to make the web links blue --- title: "R Notebook" output: pdf_document: default html_notebook: default urlcolor: blue

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  3. proslijedio/la je Tweet
    31. sij

    Important work from carefully comparing sample preparation protocols for scRNA-seq. Identifies protocol-dependent biases in cell type recovery and gene expression for human pancreatic islets, but results likely extend to many primary tissues:

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  4. proslijedio/la je Tweet
    1. velj

    In our & work we use 's databases. Two months ago noticed some inconsistencies between 's cDNA fasta and GTF files and investigated with . Now has written up an in-depth analysis:

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  5. proslijedio/la je Tweet
    2. velj

    If you have not read this paper yet, it is a good time to do it and then get tested at HLI

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  6. proslijedio/la je Tweet
    1. velj

    our lab's first tool in --- ! We'd love any rust advice / feedback you might have :)

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  7. proslijedio/la je Tweet
    30. sij

    Recent paper by Fleres used PATRIC's annotation service.

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  8. proslijedio/la je Tweet
    30. sij

    "Results clearly indicate that although pediatricians currently have a low level of familiarity with pharmacogenetics, the majority perceive it to be an effective tool for enhancing drug efficacy and safety"

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  9. proslijedio/la je Tweet
    29. sij

    Precision medicine integrating whole-genome sequencing, comprehensive metabolomics, and advanced imaging

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  10. proslijedio/la je Tweet

    Read the latest paper on : Deep whole-genome sequencing of 3 cancer cell lines on 2 sequencing platforms

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  11. proslijedio/la je Tweet
    28. sij

    I'm teaching an introduction (to an introduction) to single-cell RNA-seq today and making use of slides that others might find useful:

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  12. proslijedio/la je Tweet
    23. sij

    Taking effective treatment means people living with HIV can now lead full and healthy lives. So why not share this animation?

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  13. proslijedio/la je Tweet
    26. sij

    Study finds correlation of tumor mutation burden and tumor purity in whole-exome and targeted sequencing data, suggests new method to predict response to immune checkpoint blockade

    Somatic mutation frequency across different molecular cancer types. Hoadley et al. (2018) Cell
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  14. proslijedio/la je Tweet
    26. sij

    10 simple Linux tips which save 50% of my time in the command line

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  15. proslijedio/la je Tweet
    24. sij

    ARTIC have developed a set of lab and bioinformatics protocols for the nCoV-2019 virus using a targeted multiplex primer scheme. This package enables direct sequencing and real-time analysis with RAMPART of the coronavirus on nanopore sequencers:

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  16. proslijedio/la je Tweet
    24. sij

    Discovering millions of datasets on the web - Google via thanks

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  17. proslijedio/la je Tweet
    22. sij

    Tognetti et al - Deciphering the Signaling Network Landscape of Breast Cancer Improves Drug Sensitivity Prediction - in collab w , Beyer lab & us. Cool CytoF data. Our A Gabor & did logic-modeling + drug prediction

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  18. proslijedio/la je Tweet
    22. sij
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  19. proslijedio/la je Tweet
    21. sij

    Constantly looking to get nested data into a pandas DataFrame? json_normalize has your back!

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  20. proslijedio/la je Tweet
    21. sij
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