Tweetovi
- Tweetovi, trenutna stranica.
- Tweetovi i odgovori
- Medijski sadržaj
Blokirali ste korisnika/cu @johanneskoester
Jeste li sigurni da želite vidjeti te tweetove? Time nećete deblokirati korisnika/cu @johanneskoester
-
Recently, our daughter Flora Amélie was born. I will now be on parental leave for a month. Looking forward to merge your PRs in March ;-).pic.twitter.com/pvwYQ4yLGJ
Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Johannes Köster proslijedio/la je Tweet
After 10+ years of writing Python, I love that Rust is forcing me to think in a very different way. I also appreciate
@johanneskoester rust-bio, which I’ve been using for examples of idiomatic Rust related to my problem domain.Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Johannes Köster proslijedio/la je Tweet
This is what it looks like to push 750 Gbytes of wheat exome data through a 50 node, 2.4k CPU auto-scaling cluster on
@awscloud. Made easy with@ronin_cloud and a 6,670 job#Snakemake pipeline@johanneskoester#AdelaideResearch#Goliath@bioinforadpic.twitter.com/iSpjgZjTM5
Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
New official
#Snakemake workflow for variant calling with#Varlociraptor:https://github.com/snakemake-workflows/dna-seq-varlociraptor …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Johannes Köster proslijedio/la je TweetHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi
-
Here comes the brand new official 2min
#Snakemake intro: https://youtu.be/UOKxta3061g . Thanks to@Sci_Ani!Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
See here for the details: https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#jupyter-notebook-integration …
Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
#Snakemake 5.10.0 is released. It introduces@ProjectJupyter integration, bringing the best of two worlds together: Scalable, modular, and readable data analysis definition with#Snakemake and fast interactive prototyping of individual steps (e.g. for plotting) with Jupyter. 1/nPrikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Johannes Köster proslijedio/la je Tweet
Thanks to our expert
@johanneskoester for sharing his latest tool for variant calling! Great to close the scientific program of the WGGC2020 News&Views#Bonn with also#Bioinformatics applications!https://twitter.com/a_succurro/status/1217087025163259904 …
Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi
-
Johannes Köster proslijedio/la je Tweet
Want to join a
#DFG funded project that studies multiple stressor effects on streams? Great project team@MuseumKoenig@leeselab@LandscapEcology@Senckenberg@jaypiggott@johanneskoester 1 PhD pos. open - apply by Jan 10th#pesticides#RNA#Bioinformatics https://dnaqua.net/jobs/ pic.twitter.com/gXOvBiSpay
Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
#snakemake_wrappers 0.43.0 is released. This is the biggest release so far! It adds lots of tools contributed by the community! Docs: https://snakemake-wrappers.readthedocs.io Release notes: https://github.com/snakemake/snakemake-wrappers/releases/tag/0.43.0 …#sciworkflows#reproducibilityHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Johannes Köster proslijedio/la je Tweet
Biologists should learn how to code: analyses should be performed with version controlled reproducible workflows (such as
@johanneskoester' Snakemake). This requires rudimentary programming skill but it's much more efficient (for the author and users).https://twitter.com/mikethemadbiol/status/1203322549813293061 …Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
With such a definition, what you get here is for each variant a posterior probability for being present AND a posterior for being an FFPE artifact. Then, one can use the FDR control mechanism of
#varlociraptor to filter those FFPE artifacts away while considering uncertainties.Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
#varlociraptor 1.5.0 is released. The#variant_calling_grammar now allows expressions for selecting particular substitutions. This can e.g. be used to model FFPE artifacts in an uncertainty-aware manner: https://varlociraptor.github.io/docs/calling/#ffpe-artifact-detection …pic.twitter.com/eRg3r58J7D
Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
I am proud to say that this also means that
#Snakemake appears to be pretty close to the amazing@galaxyproject in terms of popularity nowadays. Here are the stats for their 2018 paper: https://badge.dimensions.ai/details/id/pub.1103799417 ….Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
#Snakemake has just reached 500 citations! 341 of them in the last two years. This makes on average ~3 new citations (i.e. ~3 new#Snakemake driven published data analyses) per week: https://badge.dimensions.ai/details/id/pub.1018944052 …#sciworkflows#reproducibilityPrikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Johannes Köster proslijedio/la je Tweet
"The previous PhD student used a self-developed code. I have managed to get the code(s), however, it is not working and gives multiple errors when I try."
#StopPhDWare Students and scientists need training in coding etc to mitigate time sinks like the above.#reproducibilityHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
#Varlociraptor 1.4.0 now also supports MNVs. Moreover, it splits variant calling into a per-sample preprocessing and the actual joint calling, thereby improving scalability and allowing to quickly process multiple#variant_calling_grammar definitions. https://varlociraptor.github.ioHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Johannes Köster proslijedio/la je Tweet
So cool to see a blockchain approach for caching and reusing intermediate results between workflows
The cache can be shared -- for everyone in your group, institute, or computing environment
#blockchain#bioinformatics#science#python https://twitter.com/johanneskoester/status/1195378097815785472 …pic.twitter.com/0XKCk05buQ
Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi
Čini se da učitavanje traje već neko vrijeme.
Twitter je možda preopterećen ili ima kratkotrajnih poteškoća u radu. Pokušajte ponovno ili potražite dodatne informacije u odjeljku Status Twittera.