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jburnmurdoch's profile
John Burn-Murdoch
John Burn-Murdoch
John Burn-Murdoch
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@jburnmurdoch

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John Burn-MurdochVerified account

@jburnmurdoch

Stories, stats & scatterplots for @FinancialTimes | Mainly Covid for now | Visiting senior fellow @LSEdataScience | john.burn-murdoch@ft.com | #dataviz

Doncaster  ➡️ London
ft.com/jbm
Joined June 2009

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    1. John Burn-Murdoch‏Verified account @jburnmurdoch May 7

      NEW: time for a proper thread on B.1.617.2, the subtype of the Indian variant that has been moved to "variant of concern" today by Public Health England. First, it’s clear case numbers from this lineage are growing faster than other imported variants have done in the UK.pic.twitter.com/hUUzBvCsY1

      86 replies 1,515 retweets 3,418 likes
      Show this thread
    2. John Burn-Murdoch‏Verified account @jburnmurdoch May 7

      Here’s the same thing on a logit scale (HT @trvrb), which makes it easier to compare growth rates. As we can see, B.1.617.2 is on a fairly steady upward trajectory, which other variants failed to achieve.pic.twitter.com/TPTwU2LCNm

      3 replies 85 retweets 358 likes
      Show this thread
    3. John Burn-Murdoch‏Verified account @jburnmurdoch May 7

      So we know its trajectory looks different to the other imported variants, but that doesn’t tell us enough. We need a better benchmark: how does its growth compare to B.1.1.7 at the same stage of its emergence? Remarkably similar, it turns out:pic.twitter.com/z32Q6QGC8n

      14 replies 143 retweets 537 likes
      Show this thread
    4. John Burn-Murdoch‏Verified account @jburnmurdoch May 7

      In terms of its share of all sequenced UK cases, B.1.617.2 is following ~exactly the same path as B.1.1.7 did last year. But there’s a caveat here, and it’s a double-edged caveat.

      3 replies 50 retweets 272 likes
      Show this thread
    5. John Burn-Murdoch‏Verified account @jburnmurdoch May 7

      Because overall UK case numbers are much lower today than they were last November, the same % of cases is a smaller number. If we map those %s onto total UK cases, we see there are much fewer new B.1.617. 2 infections today than there were with B.1.1.7 at the same point.pic.twitter.com/frpX1URaHt

      1 reply 71 retweets 376 likes
      Show this thread
    6. John Burn-Murdoch‏Verified account @jburnmurdoch May 7

      And indeed, if we plot the same thing on a log scale, there are also signs B.1.617.2 may be following a slightly shallower ascent than B.1.1.7, too.pic.twitter.com/Nkb7aaUGbP

      3 replies 53 retweets 282 likes
      Show this thread
    7. John Burn-Murdoch‏Verified account @jburnmurdoch May 7

      But the flip-side of this is, B.1.1.7 was growing when there was more social mixing. Conditions were favourable to transmission. Numbers of B.1.617.2 are rising at a time of less mixing. This has led some to worry that it could be more transmissible (but we don’t yet know this).pic.twitter.com/Ni2jj8Zxi6

      15 replies 76 retweets 371 likes
      Show this thread
    8. John Burn-Murdoch‏Verified account @jburnmurdoch May 7

      So how should we think about all of this? First, there’s the data itself: it’s critical that we know how many of the B.1.617.2 cases are second-generation cases from returning travellers, and how many are genuine community spread. Today PHE said almost half are travel-related.

      3 replies 57 retweets 332 likes
      Show this thread
    9. John Burn-Murdoch‏Verified account @jburnmurdoch May 7

      All returning travellers have their tests sequenced, so we know this inflates numbers for B.1.617.2. If national trend is downward, and you have a glut of travellers returning from India, the imported cases (and their secondary cases) alone could artificially imply rapid growth.

      6 replies 53 retweets 325 likes
      Show this thread
      John Burn-Murdoch‏Verified account @jburnmurdoch May 7

      Hopefully we keep getting breakdowns of how many were linked to returning travellers and how many were not. In the absence of that, it’s a case of wait and see. It was several weeks after this point that B.1.1.7 really took off. That may happen with B.1.617.2, or it may not.pic.twitter.com/VNOOnn2Oih

      6:53 AM - 7 May 2021
      • 57 Retweets
      • 280 Likes
      • Juan Piñeiro Dr Peter Dilworth 💙 #Woke #FBPA #GTTO 3.5% 😷 Rajeev Chitguppi MDS Rowanne La Thor 📚🧜‍♀️💍🏳️‍🌈🌱🐋 Karim Mitha FRSA FRSPH DFPH ⚫ Jen Proud European from Austria🇪🇺🇦🇹 🌏 Isabelle Hfuhruhurr Dmitry R
      5 replies 57 retweets 280 likes
        1. New conversation
        2. John Burn-Murdoch‏Verified account @jburnmurdoch May 7

          So that’s the issue with the data itself, but more important is what all of this means in the context of the vaccines. And here, there are lots of reasons to be optimistic:

          1 reply 27 retweets 221 likes
          Show this thread
        3. John Burn-Murdoch‏Verified account @jburnmurdoch May 7

          John Burn-Murdoch Retweeted Gupta Lab

          First, B.1.617.2 does not have the E484Q mutation, which has been linked to immune escape. Among its mutations is L452R, which @GuptaR_lab has found to be less immune-evasive than the mutations found in e.g the Brazilian and South African variantshttps://twitter.com/GuptaR_lab/status/1388422662595219459 …

          John Burn-Murdoch added,

          Gupta Lab @GuptaR_lab
          Here is the REALLY IMPORTANT part. The combination of the two mutations gives a value of 4, in other words the two mutations DO NOT confer substantial antibody evasion and we can stop using the term 'Double Mutant'.
          Show this thread
          5 replies 102 retweets 405 likes
          Show this thread
        4. John Burn-Murdoch‏Verified account @jburnmurdoch May 7

          John Burn-Murdoch Retweeted Devan Sinha

          And second, the data we do have on people being infected with B.1.617.2 after receiving the vaccine is — despite claims to the contrary — very reassuring. Even among the most vulnerable populations, infections are not turning into severe illness or deathhttps://twitter.com/DevanSinha/status/1390388896433942544 …

          John Burn-Murdoch added,

          Devan Sinha @DevanSinha
          15 cases of B1617.2 (🇮🇳 variant) in care home in London a week after 2nd dose of Oxford/AZ- likely too soon for full effectiveness 0 deaths. Chance of this outcome without vaccine was ~ 1 in 800 (0.12%) https://www.theguardian.com/world/2021/may/06/new-concerns-indian-covid-variant-clusters-found-across-england-ongoing-risk-high … pic.twitter.com/juJxgbob0z
          Show this thread
          6 replies 99 retweets 435 likes
          Show this thread
        5. John Burn-Murdoch‏Verified account @jburnmurdoch May 7

          This is strongly supportive of the last point about mutations & immune escape: If (and it remains an if) B.1.617.2 is found to be more transmissible than other variants, it doesn’t look like vaccines will struggle to protect infected people from getting seriously ill.

          7 replies 56 retweets 328 likes
          Show this thread
        6. John Burn-Murdoch‏Verified account @jburnmurdoch May 7

          As @mugecevik told @AnnaSophieGross in our story, "Right now the most important thing is that the vaccines are working against this variant". And it really is as simple as that until we learn more. As I’ve been saying, keep *watching*, but don’t keep *worrying*.

          6 replies 82 retweets 475 likes
          Show this thread
        7. John Burn-Murdoch‏Verified account @jburnmurdoch May 7

          Here’s our full story: https://www.ft.com/content/8e134734-c3f0-4694-9bdb-9d03e67dadec … And here’s @PHE_uk’s report today https://www.gov.uk/government/news/confirmed-cases-of-covid-19-variants-identified-in-uk …

          1 reply 43 retweets 180 likes
          Show this thread
        8. John Burn-Murdoch‏Verified account @jburnmurdoch May 7

          Final comments: I’ve deliberately included the "numbers are rising!" charts alongside the caveats about why that is not necessarily reason to worry. I think it’s important to show the raw data, even if there are many reasons to take it with a pinch of salt.

          1 reply 30 retweets 299 likes
          Show this thread
        9. John Burn-Murdoch‏Verified account @jburnmurdoch May 7

          I also want people to realise 2 things can both be true: numbers rising, and the situation not necessarily being scary. It’s not either or. If someone shows you a scary chart of rising numbers, ask whether it really is scary given what else we know (and hey, perhaps it will be).

          6 replies 64 retweets 431 likes
          Show this thread
        10. John Burn-Murdoch‏Verified account @jburnmurdoch May 7

          I’ll continue to share as much information as I have on B.1.617.2 as the picture becomes clearer. As ever, feel free to get in touch with questions, comments etc.

          46 replies 37 retweets 526 likes
          Show this thread
        11. End of conversation

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