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jackfruitstaken's profile
JF
JF
JF
@jackfruitstaken

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JF

@jackfruitstaken

Jackfruit from the Internet. "Ein Tier, das nur in der Gesellschaft sich vereinzeln kann." - Marx "Blam[es] on his boots the faults of his feet." - Beckett

Joined June 2009

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    1. Trevor Bedford‏Verified account @trvrb 9 Dec 2020

      Trevor Bedford Retweeted The COVID Tracking Project

      The US reported over 3000 deaths from #COVID19 today and the 7-day average of deaths has hit a record with today's average of 2276. Here, I dig into these grim mortality numbers and look at deaths across ages and across weeks in the epidemic. 1/14https://twitter.com/COVID19Tracking/status/1336837356343607297 …

      Trevor Bedford added,

      4 bar charts showing key COVID-19 metrics for the US over time. Today, states reported 1.8M tests, 210k cases, 106,668 currently hospitalized (record), and 3,054 deaths (record).
      The COVID Tracking ProjectVerified account @COVID19Tracking
      Our daily update is published. States reported 1.8 million tests, 210k cases, and a record 106,688 COVID-19 patients in US hospitals. There were 3,054 reported deaths today -- the highest single-day total to date. pic.twitter.com/LcgzPJZdO6
      Show this thread
      19 replies 209 retweets 483 likes
      Show this thread
    2. Trevor Bedford‏Verified account @trvrb 9 Dec 2020

      I'm using data from @CDCgov (https://www.cdc.gov/nchs/nvss/vsrr/covid_weekly/ …) that records weekly deaths involving COVID-19 as well as deaths from all causes. These data use actual date of death but there is a reporting lag. 2/14

      2 replies 5 retweets 67 likes
      Show this thread
    3. Trevor Bedford‏Verified account @trvrb 9 Dec 2020

      CDC reports 261k deaths involving COVID-19 in this dataset. Over half of these deaths are in individuals 75 or older and over three quarters are in individuals 65 or older. 3/14pic.twitter.com/fvVsykkgXF

      1 reply 23 retweets 94 likes
      Show this thread
    4. Trevor Bedford‏Verified account @trvrb 9 Dec 2020

      If we look over time we see the following where COVID-19 associated deaths are shown as colored interval on top of the background of all cause mortality in gray. This is not a stacked plot and so the notable bump in all cause mortality in April is attributable to COVID-19. 4/14pic.twitter.com/RpFWfjdJ8A

      1 reply 15 retweets 80 likes
      Show this thread
    5. Trevor Bedford‏Verified account @trvrb 9 Dec 2020

      You can see from this that COVID-19 associated deaths are a decent fraction of all cause mortality for individuals over ~35 years. It's also quite obvious that deaths in the past 4 weeks are not fully reported (hence the gray intervals that dive towards zero at the present). 5/14

      1 reply 8 retweets 74 likes
      Show this thread
    6. Trevor Bedford‏Verified account @trvrb 9 Dec 2020

      Still, the increased rate of deaths from the 3rd wave is visible as rising COVID-19 deaths in mid-November. With continued high levels of circulation I fully expect this bump to continual to climb. 6/14

      1 reply 7 retweets 54 likes
      Show this thread
    7. Trevor Bedford‏Verified account @trvrb 9 Dec 2020

      If we look from March to today, we see that COVID-19 associated deaths are ~3.5% of all cause mortality in 25-34 year olds and 9 to 11% of all cause mortality in individuals over 45. 7/14pic.twitter.com/GoeCz5NZOy

      3 replies 40 retweets 104 likes
      Show this thread
    8. Trevor Bedford‏Verified account @trvrb 9 Dec 2020

      There hasn't been a marked shift in age distribution of deaths since May. 8/14pic.twitter.com/5oiXF9lTUB

      3 replies 10 retweets 71 likes
      Show this thread
    9. Trevor Bedford‏Verified account @trvrb 9 Dec 2020

      By using age-specific mortality alongside estimates of total infections across age groups from seroprevalence, researchers have estimated the age-specific infection fatality ratio (IFR). 9/14

      3 replies 7 retweets 56 likes
      Show this thread
    10. Trevor Bedford‏Verified account @trvrb 9 Dec 2020

      @nfbrazeau, @lucy_okell and colleagues estimate age-specific IFR ranging from 0.02% in 15-24 year olds to 16% in individuals over 90. Remarkably, IFR against age appears linear on a log scale suggesting risk of death grows exponentially with age. http://www.imperial.ac.uk/mrc-global-infectious-disease-analysis/covid-19/report-34-ifr/ … 10/14pic.twitter.com/vT3jXnBJv9

      5 replies 63 retweets 200 likes
      Show this thread
      JF‏ @jackfruitstaken 9 Dec 2020
      Replying to @trvrb @NFBrazeau @lucy_okell

      Do we have confidence as to the seroprevalence surveys now? I remember a few out the gate seemed to underestimate IFR/overestimate asymptomatic cases.

      5:26 PM - 9 Dec 2020
      • 1 Like
      • Ryan Hisner
      1 reply 0 retweets 1 like
        1. Trevor Bedford‏Verified account @trvrb 9 Dec 2020
          Replying to @jackfruitstaken @NFBrazeau @lucy_okell

          A couple thoughts: 1. These sorts of meta-analyses seem to useful in averaging out error from individual sero studies. 2. Very early sero studies were back when only a small fraction of the population had been infected. Continued studies have had higher prevalence to work from.

          0 replies 0 retweets 2 likes
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