higlass.io

@higlass_io

Big data viewer extraordinaire!

Boston, MA
higlass.io
Vrijeme pridruživanja: siječanj 2019.
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  1. Prikvačeni tweet
    29. sij

    📣🐍Big new higlass-python release out last weekend! Create overlay and dataset ratio tracks directly in a notebook. Check out and for examples and more information.

    15 proslijeđenih tweetova 43 korisnika označavaju da im se sviđa
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  2. proslijedio/la je Tweet
    30. sij

    Hi people. I was doing comparative the other day and was day dreaming: will HiGlass support vs genome alignment matrices and their respective annotation plotting? One genome on the X, another one on the Y and the rearrangements in the central panel?

    1 reply 1 proslijeđeni tweet 4 korisnika označavaju da im se sviđa
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  3. proslijedio/la je Tweet
    29. sij

    Cool! Programmatically interact with chromatin-contact (ie Hi-C) data using & .

    📣🐍Big new higlass-python release out last weekend! Create overlay and dataset ratio tracks directly in a notebook. Check out and for examples and more information.
    2 proslijeđena tweeta 6 korisnika označava da im se sviđa
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  4. proslijedio/la je Tweet
    22. sij

    A few releases ago added an interactive viewconf editor to . Today it’s my go-to method for finding the names of track options to use with the version of HiGlass (). Super handy 👍 Thanks Fritz!

    4 proslijeđena tweeta 14 korisnika označava da im se sviđa
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  5. 14. sij

    It’s a new year and time for a new update! Version 1.8 of HiGlass is out with bug fixes, doc updates and a new "segment" style for bed tracks (). Check out the the full list of changes in the release notes ().

    12 proslijeđenih tweetova 32 korisnika označavaju da im se sviđa
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  6. proslijedio/la je Tweet
    6. pro 2019.

    HiPiler v1.4 is out 🥳 I finally added support for modern Cooler files (>v0.8) thanks to , custom gene annotations, and updated to v1.7! Also, huge thanks to for reporting issues and testing.

    1 reply 12 proslijeđenih tweetova 34 korisnika označavaju da im se sviđa
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  7. proslijedio/la je Tweet
    4. pro 2019.

    Slides for my 2019 Annual Meeting presentation about & related visualization efforts: Big shoutout to + + for making it happen & the analysts + developers who are using our tools! 👏

    1 reply 6 proslijeđenih tweetova 17 korisnika označava da im se sviđa
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  8. proslijedio/la je Tweet
    4. pro 2019.

    Hey tweeps, did you know that when you drop a link to a shared view into a tweet you will automagically get a thumbnail preview your view embedded in your tweet? Try it yourself! H/T

    9 proslijeđenih tweetova 26 korisnika označava da im se sviđa
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  9. proslijedio/la je Tweet
    13. stu 2019.

    If you're wondering why you'd need view scrolling if you can use multiple HiGlass instances: it's faster and you're not running into issues with too many WebGL contexts. With some tricks, you can still make it look and feel like individual instances as we do in Peax (see video)

    1 reply 3 proslijeđena tweeta 12 korisnika označava da im se sviđa
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  10. 13. stu 2019.

    Speaking of updates: we also released higlass-python v0.3 (), which now allows you to synchronize value scales between tracks much more easily. And it already ships with HiGlass v1.7 🎉 Changelog:

    0:17
    Et voilà: v1.7 is out 🥳 This release is primarily for developers using HiGlass in their software. Since v1.6 we've done a lot under the hood and now support scrollable views, which is useful when you have a lot of stacked tracks. Demo:
    4 proslijeđena tweeta 13 korisnika označava da im se sviđa
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  11. 12. stu 2019.

    Et voilà: v1.7 is out 🥳 This release is primarily for developers using HiGlass in their software. Since v1.6 we've done a lot under the hood and now support scrollable views, which is useful when you have a lot of stacked tracks. Demo:

    18 proslijeđenih tweetova 63 korisnika označavaju da im se sviđa
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  12. proslijedio/la je Tweet
    8. stu 2019.

    Micro-C data make up some of the deepest datasets in the 4DN data portal. View interactive displays comparing Micro-C and Hi-C from Krietenstein et al (2019) here:

    3 proslijeđena tweeta 9 korisnika označava da im se sviđa
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  13. proslijedio/la je Tweet
    7. stu 2019.

    Plus download data and publication quality figures, perform comparative analyses &more! Lots of recent hard work by building upon

    Pick your favourite gene and look at it in , from Wouter Meuleman . is so 20 minutes ago.
    3 proslijeđena tweeta 12 korisnika označava da im se sviđa
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  14. proslijedio/la je Tweet
    28. lis 2019.

    Lots of interactive figures in this paper on meiotic chromosome assembly in S. cerevisiae:

    1 reply 11 proslijeđenih tweetova 38 korisnika označava da im se sviđa
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  15. proslijedio/la je Tweet
    26. ruj 2019.

    I enjoyed putting together this review with ! Hopefully it'll be helpful to new (and experienced) Hi-C analysts 🙂 Thanks to , and the reviewers for a smooth review process and super helpful feedback!

    40 proslijeđenih tweetova 87 korisnika označava da im se sviđa
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  16. 13. kol 2019.

    Wooohoo 🥳 Awesome work 🎉HiGlass wouldn’t be as cool as it is without cooler. With cooler less bytes have to fly over the cyber space so your precious heatmaps render much faster!

    Late to tweet, but the cooler paper is finally published! A huge thanks to the incredibly cool community of users who make cooler even cooler!
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    2 proslijeđena tweeta 15 korisnika označava da im se sviđa
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  17. proslijedio/la je Tweet
    12. kol 2019.

    I am super excited to share our forthcoming InfoVis paper on Pattern-Driven Navigation in 2D Multiscale Visualizations with Scalable Insets 🎉 Great work w/ 1/6

    11 proslijeđenih tweetova 36 korisnika označava da im se sviđa
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  18. proslijedio/la je Tweet
    1. kol 2019.

    More progress with fragment shading. Bioinformaticians can probably guess where this is heading.

    8 proslijeđenih tweetova 58 korisnika označava da im se sviđa
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  19. proslijedio/la je Tweet
    22. srp 2019.

    Exiting new genomic work by , , and in the latest release of . If you want to join this rad team, please check out the new postdoc opportunities in my lab: expertise wanted!

    📢 We have yet another big update for you: v1.6 is out! 🥳 The two biggest new features are diagonal split matrices for two matrices or scalings and the in-app viewconfig editor for quick view adjustments of advanced features 🎉
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    1 reply 12 proslijeđenih tweetova 16 korisnika označava da im se sviđa
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  20. 22. srp 2019.

    Finally, v1.6 comes with the new v5 of (awesome job guys 👍) and many other smaller improvements and bug fixes. For a detailed list of changes take a look at

    3 proslijeđena tweeta 7 korisnika označava da im se sviđa
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