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Great tutorial by Malte Lücken on
#scRNAseq at the Workshop on Computational Models in Biology and Medicine 2020. Check out the paper: https://www.embopress.org/doi/abs/10.15252/msb.20188746 …#SystemsBiology,#SystemsMedicine,#bioinformatics. -
50mu AFAIK ie ~5cells depending on tissue. So deconvolution using
#scRNAseq is necessary to get true single cell resolution. -
ZipSeq: Barcoding for Real-time Mapping of Single Cell Transcriptomes. ZipSeq uses patterned illumination and photocaged oligonucleotides to serially print barcodes (Zipcodes) onto live cells within intact tissues Ref: http://bit.ly/37ZNrN4
#singlecell#ZipSeq#scRNAseq pic.twitter.com/IWHMReGZzu
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ZipSeq: Barcoding for Real-time Mapping of Single Cell Transcriptomes. Using ZipSeq, they mapped gene expression in 3 settings: in-vitro wound healing, live lymph node sections & in a live tumor microenvironment (TME) Ref: http://bit.ly/37ZNrN4
#singlecell#ZipSeq#scRNAseq pic.twitter.com/WrNzpDyoqY
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They are birds... They are planes... They are
#scrnaseq#clusters!pic.twitter.com/RNiH2UWEgb – mjesto: Johns Hopkins School of Medicine -
A single-cell RNAseq atlas of the pathogenic stage of Schistosoma mansoni identifies a key regulator of blood feeding. Ref: http://bit.ly/39941dC
#singlecell#scRNAseq#Schistosomapic.twitter.com/V1zOlKAi1p
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We're excited to release a
#scanpy update for the analysis and visualization of#spatialTranscriptomics data, focussing on@10xGenomics Visium and MERFISH, thx@g_palla1. Tutorial at https://nbviewer.jupyter.org/github/theislab/scanpy-tutorials/blob/master/analysis-visualization-spatial.ipynb … Support for different data types and integration with#scRNAseq soon! pic.twitter.com/SC6sYldpED
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What a nice surprise early this morning! Thank you
@satijalab for the really cool T! This was our 1st#singlecellgenomicsday, and I am excited to see how the field will evolve for next year#scRNAseq#seurat#singlecell#singlecellgenomicsday. Cool!pic.twitter.com/TzBUuHuVuP
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Learning code
in general and #scRNAseq analytics in particular is hard
At @FASTGenomics we therefore created a new
tutorial series
with @ProjectJupyter notebooks
Tutorial 1/4
Getting started with FASTGenomics Lab
https://beta.fastgenomics.org/webclient/ui/#/analyses/detail-analysis-42e3571101184ed78856cbd83adfeb7e …
Enjoy! /mppic.twitter.com/wHefwPczj6
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Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration Fig. Single-cell transcriptomic analysis reveals human retina diversity |
@manoliskellis Ref: https://go.nature.com/37VmsSR#singlecell#scRNAseq#retinapic.twitter.com/PLEPKTKETP
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@madisonrmack and I highlighting Nagao Lab's nice paper using#scRNAseq for novel#therapeutic approach in@NatureMedicine - how do we reconcile a traditional#RCT paradigm with the emergence of#precisionmedicine giving us such compelling & swift data to use new#treatments ?https://twitter.com/SaheliSadanand/status/1224394616339935232 … -
Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue Adaptation |
@jeremygoettel Fig. Steady-State scRNA-Seq Datasets of CD4+ T Cells from LT and NLT Ref: http://bit.ly/392R84t#singlecell#scRNAseq#Transcriptomics#Tcellpic.twitter.com/2eqtupT0mW
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Single-cell genomic approaches for developing the next generation of immunotherapies. |
@NatureMedicine by @IdoAmitLab Ref: https://go.nature.com/36VaSpo#singlecell#scRNAseq#immunotherapy#genomicspic.twitter.com/bn2kLReaKT
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I've spent a lot of time the past two weeks writing and editing R and python code for
#scRNAseq analysis. Python has eclipsed R. Don't @ me.Prikaži ovu nit -
Dr. Harbour
@umiamimedicine treated my mom's eye cancer. He's an amazing physician, and I'm proud@10xGenomics enables his#singlecell research#scRNAseq#CNVhttps://www.nature.com/articles/s41467-019-14256-1 … -
Great News & Views from
@itchdoctor on a recent@NatureMedicine paper describing how#scRNAseq enabled successful treatment of a patient with DRESS, a rare and severe#skin adverse drug reaction
http://go.nature.com/2uWhreb -
It is always been a pleasure to read Pierre-Luc Germain's work. Another amazing benchmarking in
#SingleCell analysis providing recommendations for pipelines. A lot happens during analysis in#scRNASeq . Don't miss out on this work from@markrobinsonca & team!
#Genomicshttps://twitter.com/biorxivpreprint/status/1224094330496987143 … -
Mapping human cell phenotypes to genotypes with single-cell genomics. Fig. Human organ maps can resolve disease phenotypes Ref: http://bit.ly/2vEcsiF
#singlecell#scRNAseq#phenotype#genotype#genomics@randall_platt@GrayCampLab@TreutleinLabpic.twitter.com/dr28oHeQYS
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Evaluating the function of immunotherapies by simple parameters, like tumor growth or cell type measurements, limits our ability to outline their precise mechanisms of action.
#scRNAseq resolves this, by defining the cells and pathways affected by the treatment. (4/6)Prikaži ovu nit -
Join us for our first
#RNARevolution of 2020 - we're visiting St. Louis, MO for an@ACDbio Symposium, Mar3rd -with notable scientists discussing how they#AdvanceTheirRNAISH in fields of#scRNAseq#Neuroscience#CellandGeneTherapy and more! Register today! http://bit.ly/394BvK6 pic.twitter.com/OOAHPzNVqZ
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