-
We're excited to release a
#scanpy update for the analysis and visualization of#spatialTranscriptomics data, focussing on@10xGenomics Visium and MERFISH, thx@g_palla1. Tutorial at https://nbviewer.jupyter.org/github/theislab/scanpy-tutorials/blob/master/analysis-visualization-spatial.ipynb … Support for different data types and integration with#scRNAseq soon! pic.twitter.com/SC6sYldpED
-
In our
#RNAseq &#scRNAseq work we use@ensembl's databases. Two months ago@sinabooeshaghi noticed some inconsistencies between@ensembl's cDNA fasta and GTF files and investigated with@lioscro. Now@LambdaMoses has written up an in-depth analysis:https://fromsystosys.netlify.com/2020/01/31/comparing-ensembl-gtf-and-cdna/ …Prikaži ovu nit -
Excited to share our scVelo manuscript - led by
@VolkerBergen and@falexwolf, we generalize the beautiful RNA velocity concept from@KharchenkoLab and@slinnarsson to transient cell states through dynamical modeling. http://www.biorxiv.org/content/10.1101/820936v1 … and http://www.scvelo.org#scRNAseq pic.twitter.com/LuuKjmKbYt
-
Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration Fig. Single-cell transcriptomic analysis reveals human retina diversity |
@manoliskellis Ref: https://go.nature.com/37VmsSR#singlecell#scRNAseq#retinapic.twitter.com/PLEPKTKETP
-
Very excited to share our new preprint describing a method for ultra-high throughput single-cell RNA-seq https://www.biorxiv.org/content/10.1101/2019.12.17.879304v1 …
#scRNAseq pic.twitter.com/iROFp3wDMJ
Prikaži ovu nit -
How to arrange
#scRNAseq in space? We released the code of novoSpaRc, including scripts reproducing results of our paper https://bit.ly/2D7mSqS -
Researchers from the
@JohnsHopkinsSPH systematically evaluate the performance of 18 state-of-the-art#scRNAseq imputation methods using cell line and tissue data measured across experimental protocols. https://www.rna-seqblog.com/a-systematic-evaluation-of-single-cell-rna-sequencing-imputation-methods/ … -
Cell atlas of the human thymus during development |
#scRNAseq#Thymus | Tom Taghon, Muzlifah Haniffa & Sarah Teichmann@taghon_t@Muzz_Haniffa@park_jongeun@Zeziliaconzeta@sangerinstitute@ICMNewcastle@NIHRNewcBRC@ugent_fge | Preprint@biorxivpreprint https://bit.ly/2GtydDV pic.twitter.com/bVRpeBXniy
-
Yoooo...MULTI-seq paper is live on
@naturemethods!! Our#scRNAseq sample multiplexing method uses lipid-modified oligos to append sample barcodes to cells and nuclei regardless of species or surface markers https://rdcu.be/bG4np shouts to@cmcginnisUCSF@Danny__Conrad@CAT_UCSFPrikaži ovu nit -
Congrats on the official pub Dylan and Lauren (
@LSaund11) - excellent work! https://doi.org/10.1016/j.ydbio.2019.11.008 …#zebrafish#scRNAseq We hope that all you fish folk find some useful transcriptional cell types, genes, and trajectories to keep you busy for a while. Let us know how we can help.Prikaži ovu nit -
I've spent a lot of time the past two weeks writing and editing R and python code for
#scRNAseq analysis. Python has eclipsed R. Don't @ me.Prikaži ovu nit -
ZipSeq: Barcoding for Real-time Mapping of Single Cell Transcriptomes. Using ZipSeq, they mapped gene expression in 3 settings: in-vitro wound healing, live lymph node sections & in a live tumor microenvironment (TME) Ref: http://bit.ly/37ZNrN4
#singlecell#ZipSeq#scRNAseq pic.twitter.com/WrNzpDyoqY
-
Chinook Therapeutics bags $65M to bring precision medicine to the kidney
#scRNAseq@benofreedmanhttps://www.fiercebiotech.com/biotech/chinook-therapeutics-bags-65m-to-bring-precision-medicine-to-kidney … -
Check out our paper using
#scRNAseq to interrogate#mesenchyme in liver#fibrosis, now out in@CellReports. Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosishttps://www.cell.com/cell-reports/fulltext/S2211-1247(19)31324-5#.XcrU8qekjeQ.twitter …Prikaži ovu nit -
Wondered how
#bivalent chromatin is targeted? Our@biorxivpreprint on Dppa2/4 is online! We use#scRNAseq,#MachineLearning and#epigenetics in#stemcells to uncover an exciting new mechanism.@ReikLab@BabrahamInst@CRUKCambridge https://www.biorxiv.org/content/10.1101/832873v1 …pic.twitter.com/ShLMzVd9LE
Prikaži ovu nit -
NIGHTMARE AFTER XMAS! SORRY/HAPPY to present our benchmarking work on
#singlecell sample preservation artifacts. We detected strong systematic biases related to sampling timing! MUST-READ for#scRNAseq and#scATACseq of#biobank and clinical cohorts.https://www.biorxiv.org/content/10.1101/2020.01.15.897066v1 … -
Great tutorial by Malte Lücken on
#scRNAseq at the Workshop on Computational Models in Biology and Medicine 2020. Check out the paper: https://www.embopress.org/doi/abs/10.15252/msb.20188746 …#SystemsBiology,#SystemsMedicine,#bioinformatics. -
50mu AFAIK ie ~5cells depending on tissue. So deconvolution using
#scRNAseq is necessary to get true single cell resolution. -
ZipSeq: Barcoding for Real-time Mapping of Single Cell Transcriptomes. ZipSeq uses patterned illumination and photocaged oligonucleotides to serially print barcodes (Zipcodes) onto live cells within intact tissues Ref: http://bit.ly/37ZNrN4
#singlecell#ZipSeq#scRNAseq pic.twitter.com/IWHMReGZzu
-
They are birds... They are planes... They are
#scrnaseq#clusters!pic.twitter.com/RNiH2UWEgb – mjesto: Johns Hopkins School of Medicine
Čini se da učitavanje traje već neko vrijeme.
Twitter je možda preopterećen ili ima kratkotrajnih poteškoća u radu. Pokušajte ponovno ili potražite dodatne informacije u odjeljku Status Twittera.