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Beautiful paper looking into cell-cell interactions (ProximID) using
#scRNA-seq by Jean-Charles Boisset, Alexander van Oudenaarden and co. Pairs are separated and sequenced individually; interesting interaction between megakaryocytes and neutrophils. https://www.nature.com/articles/s41592-018-0009-z … -
The evaluation of
#scRNA-seq pipelines from Enard&@IHellmann labs out now in@NatureComms. Using simulations, they compare 5 scRNA-seq techniques, 3 mapping, 4 imputation, 7 normalisation and 4 differential expression tools, and find normalisation is key: http://nature.com/articles/s41467-019-12266-7 …Prikaži ovu nit -
Check out our
#scRNA-seq and#scATAC-seq integrative analysis pipelinehttps://github.com/liulab-dfci/MAESTRO … -
Single-cell community: as part of the
@cziscience@humancellatlas project we've curated a collection of#SingleCell cluster marker signatures from studies of normal human tissues. Give them a try for annotating your#scRNA-seq data! http://www.gsea-msigdb.org/gsea/msigdb/supplementary_genesets.jsp …#bioinformatics -
Doublet-Decon allows the detection of doublets with a combination of deconvolution analyses and the identification of unique cell-state gene expression.
#scRNA-seq http://dlvr.it/QZv0NC pic.twitter.com/JfFWbIcq28
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We just released the updated stable version of MAESTRO for integrative analysis of
#scRNA-seq and#scATAC-seq, with accelerated functions and a docker image. https://github.com/liulab-dfci/MAESTRO/ … -
Zip-Seq = My wildest dreams of real-time imaging + sequencing as a single platform came true. This is quite a proof-of-concept!
#Genomics#10xGenomics#scRNA https://twitter.com/biorxiv_genomic/status/1224835333516341249 …pic.twitter.com/29uLefTzt3
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Bit fiddly to install, but sceasy just works at converting Seurat to anndata/h5ad for use in cellxgene. It also does a bunch of other format conversions! https://github.com/cellgeni/sceasy
#scRNA -
look at all those weak
#scRNA seq reads! -
Magnificent placement on Visium slide!! We are preparing library and sequencing result will be coming out soon
#Visium#10xGenomics#scRNA@10xGenomics@STomicspic.twitter.com/C98P0Ef3qF
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Optimization underway! Getting used to new microscope was little bit challenging...
@10xGenomics@STomics#Visium#10x#scRNA#spatial#trascriptomepic.twitter.com/UtDHneS5zt
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Excited to present our
#SingleCell dissection of#Alzheimers#Schizophrenia#Bipolar#Huntingtons at#ASHG19 800 Brains, 5.5M cells#scRNA#scATAC#scQTLs 4:15pm today Level3/BallroomB Session029 Talk52 https://ativsoftware.com/appinfo.php?page=Session&project=ASHG19&id=129001&server=eventpilotadmin.com … with@DrLiHueiTsai#MyriamHeiman#BradRuzicka#ROSMAPpic.twitter.com/xLzMAWli8i
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Registrations are open for the
@ISBSIB course on Single-cell RNA-Seq data analysis! It will take place in Bern on 28-29 November and will be taught by@GharibWalid.#scRNA-seq#Bioinformatics#training@unibern More information athttps://www.sib.swiss/training/course/2019-11-ngs5-single-cell … -
Want to learn how to pre-process
#10xgenomics#SingleCell RNA data? Check out the new#UseGalaxy training: https://training.galaxyproject.org/topics/transcriptomics/tutorials/scrna-preprocessing-tenx/tutorial.html … Thanks to Mehmet!#scrna pic.twitter.com/tWw0Cvx7n3
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Data denoising with transfer learning in single-cell transcriptomics https://www.nature.com/articles/s41592-019-0537-1 …
#scRNA#bioinfopic.twitter.com/6Gupvl0SOk
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A NEW method called large particle fluorescence-activated cell sorting (
#LP-FACS) enables isolation of#cardiomyocytes for high quality#scRNA-seq. http://ow.ly/GlCn30pnFU5 The study was conducted by@TheSurajKannan & authors from@JohnsHopkinspic.twitter.com/o58RgX5b8s
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Mario Suva
@broadinstitute@MGHCancerCenter and Itay Tirosh@WeizmannScience integrate#scRNA-Seq with TCGA expression analysis to generate a blueprint for glioblastoma malignant cell programs, plasticity, and modulation by genetic drivers. http://bit.ly/31uScdV pic.twitter.com/kKMaK7NwnV
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Colleagues, we have a really cool
#lungcancer project using scRNA-seq and we want a collaborator w/#scRNA-seq expertise to validate our analysis. It’s my favorite project of all time, and I don’t say that lightly! Advanced stages of prep, please collaborate with us! RT! -
I’m sporting my
@10xGenomics attire so let’s#SockItToKidneyDisease today!

@WUNephrology#scRNA-seq@WUSTLmedpic.twitter.com/qd0PnKUnnh
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A comprehensive census of distinct cell types in the mouse lateral
#hypothalamic area (LHA) revealed by single-cell RNA seq (#scRNA-seq) https://go.nature.com/2Uvni1V pic.twitter.com/WmdHH36k4W
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