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Talking this afternoon for
@cziscience about#napari@napari_imaging at#AIM2020@BerkeleyMIC@OpenMICBerkeley. Find me if you want to chat about image analysis, visualization, python, open source, or more!!pic.twitter.com/EVlA3LCFcz
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Wow!! So cool to see images from
@JuliaLanguage in#napari -
Updated
#juypter notebook: Use the apeer-ometiff-library from#apeer_micro and http://czifile.py to read#ometiff and CZI files from#zeiss_micro and display them using#ipywidgets or using the amazing#napari viewer. https://pypi.org/project/apeer-ometiff-library/ … https://github.com/zeiss-microscopy/OAD/blob/master/jupyter_notebooks/Read_CZI_and_OMETIFF_and_display_widgets_and_napari/using_apeer-ometiff-library.ipynb …pic.twitter.com/070HBy0QhG
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Great thanks for the awesome python-based nd visualization platform
@napari_imaging and napari movie maker by@guiwitz. Now I can fully change my pipeline from Imaris to#python ecosystem.
#opensource#napari pic.twitter.com/RoNUWeE844 -
The first
@napari_imaging hack day attendees. (+@sofroniewn,@TalleyJLambert, and@kne42 remotely). I’ll write more about what we did in the coming days. Thank you again@inspire9 for the space!#napari pic.twitter.com/gw3Q4uuqWi
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Version 0.2.7 of
#napari — the fast and versatile#python nD image viewer (and more) is out!https://twitter.com/napari_imaging/status/1207736975517634560 …
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the
#napari team is doing an incredible job -- rapidly iterating features, listening to the community, and communicating their mission and values https://twitter.com/napari_imaging/status/1207736975517634560 …
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Here's how I used your example for lazy loading
#omero images in#napari https://forum.image.sc/t/napari-lazy-loading-from-omero/32292 … -
Very excited to host Nicholas Sofroniew from
@cziscience at@HHMIJanelia today. He’ll talk about the exciting new#napari 3D viewer@sofroniewnpic.twitter.com/ODQv1sgUrY
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Some of us at the
@czbiohub want a 'tracklet' layer for#napari to better represent tracks in nD+t instead of hacking it together with existing layers. If you are interested, please join the discussion here: https://github.com/napari/napari/issues/539 … Let's build this together...Prikaži ovu nit -
#napari 0.2.6 has been released, featuring dockable widgets, labeled axes, faster painting, bug fixes and more. Thanks to all our contributors, particularly the new ones, and the@vispyproject for their 0.6.3 release. Full release notes:https://github.com/napari/napari/releases/tag/v0.2.6 … -
Adventures with
#napari continue... Now with cell track and lineage visualization using comet tails. Tracking is using our#btrack package for Python: https://github.com/quantumjot/BayesianTracker …pic.twitter.com/BYAoCPZ6i3
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#Napari is named after an pacific island not too far from#Fiji says@loicaroyer at@GeneMyers 65th birthday symposium@mpicbg. I see#Napari/@FijiSc hackathon in the future in some rather attractive location....@cziscience wanna help?pic.twitter.com/Vtw75zZNSg
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Using
#Napari in Jupyter notebook to get watershed segmentation for images of shape TZCYX by choosing certain Z and C is now ready at: https://github.com/kapoorlab/BioPython/blob/master/WatershedSegmentation-Clean.ipynb … Creating Binary images by thresholding and filling holes is at: https://github.com/kapoorlab/BioPython/blob/master/MakeBinary.ipynb … PR please
#BioPythonhttps://twitter.com/EntraCod/status/1197816395075145728 …Prikaži ovu nit -
I have been happily using
#napari in the past weeks for image visualisation in Python. The only missing thing is the possibility to make movies so I released a small tool to do just that. Check it out here https://github.com/guiwitz/naparimovie … and discuss herehttps://forum.image.sc/t/movies-with-napari/31588 … -
Really excited by how easily we can extend
#napari for our ML and cell tracking pipelines. It's making our dev cycle shorter and more productive. pic.twitter.com/sV1sSoTZJU
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Check out the updates on : https://github.com/zeiss-microscopy/OAD/tree/master/notebooks/Read_And_Display_Images_using_Widgets_and_Napari … used during the workshop https://github.com/zeiss-microscopy/OAD/tree/master/Workshops/2019_MIAP_Zeiss_OAD …. One of the highlights was using the
#napari viewer and ipywidgets to visualize CZI and OME-TIFFs from an jupyter notebook.#zeiss_micro#apeer_micro#miap_freiburgpic.twitter.com/TbvH9cPcXC
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On the last day of our a workshop i used Jupyter Notebooks to demonstrate some more advanced" ways to read CZI and OME-TIFF files incl. Metadata and visualize them via ipywidgets and the amazing napari viewer.
#zeiss_micro#Apeer_micro#napari pic.twitter.com/Xloc5BU08Z
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We just released
#napari 0.2.4! Includes a new gamma slider by@TalleyJLambert, much faster switching to 3D view (by@sofroniewn but thanks again to Talley), doc fixes by@crucifixkiss, better API for adding multiple channels, and more! Release notes at https://github.com/napari/napari/blob/master/docs/release/release_0_2_4.rst …https://twitter.com/jnuneziglesias/status/1187400066987741186 …
0:30Prikaži ovu nit
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