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Simulate archaic introgression and keep track of archaic segments using
#msprime - thanks for implementing this@jeromekelleher. The script lets you change the demography and evaluate just how well you can identify archaic segments (using my HMM): https://github.com/LauritsSkov/Introgression-detection/tree/master/Simulating%20data …pic.twitter.com/ioLTlKtgAG
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Ok, let's do this
@pastramimachine@petrelharp@fbaumdicker@molpopgen@GTsambos and everyone else who has contributed. Time to start getting ready for#msprime 1.0! pic.twitter.com/luhTpr1Jdy
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@GeorgiaTsambos leads the#msprime workshop at#smbespeciation, explaining tree sequences and how to generate them! pic.twitter.com/NUmcUa8Iam
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After over a year of development (1004 commits from 9 contributors),
#msprime is 0.5.0 released! https://github.com/jeromekelleher/msprime/releases/tag/0.5.0 …Prikaži ovu nit -
#msprime continues to amaze: we simulated ALL of human chr 1 with AA recombination map for 100s of samples in 13 mins. cc@jeromekelleher -
Our preprint describing some of the cool things that SLiM and
#msprime can achieve by cooperating. Tree sequences allow us simulate models at previously unthinkable scales, and seamlessly blend forward and backward sims. https://www.biorxiv.org/content/early/2018/09/04/407783 …Prikaži ovu nit -
#msprime 0.7.1 is released! Nine people contributed to this release, with major new features as well as bug and docs fixes. Packages on PyPI and conda-forge. Feature summary follows... https://msprime.readthedocs.io/en/stable/changelog.html#id1 …Prikaži ovu nit -
My talk about
#msprime at the@broadinstitute. Find out how 312TB of VCF can (in principle) be stored in 1.3GB!https://youtu.be/MH2b9iU4oUA?list=PLlMMtlgw6qNjROoMNTBQjAcdx53kV50cS … -
This looks great: ipcoal provides tools for phylogenetic analysis, built on
#msprime. https://www.biorxiv.org/content/10.1101/2020.01.15.908236v1 … -
#msprime is seriously a game changer. No need to sim using SMC, simple Python API, lots of powerful features above and beyond what ms has https://twitter.com/molpopgen/status/781228545167155200 … -
Thanks to
@jeromekelleher and#msprime's new historical samples feature, I was able to quickly test some theory! pic.twitter.com/YYcBRIyaSi
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The
#msprime tutorial book chapter I wrote with Konrad Lohse has been published. Open access, so share and enjoy! https://link.springer.com/protocol/10.1007/978-1-0716-0199-0_9 … -
I think
#msprime incorporates ancient samples: https://msprime.readthedocs.io/en/stable/tutorial.html … -
#msprime version 0.4.0 released! Highlights include numpy integration, threads & very fast LD calculation. https://github.com/jeromekelleher/msprime/releases/tag/0.4.0 … -
Coalescent Simulation with msprime https://link.springer.com/protocol/10.1007/978-1-0716-0199-0_9 …
#msprime -
Beta version of
#msprime 0.5.0 released. Feedback from brave testers would be much appreciated: https://groups.google.com/forum/#!topic/msprime-users/jNjyYN-9zyk … -
@GeorgiaTsambos leads us through a final (impromptu) session on using#msprime and#SliM for combining coslescent and forward in time simulations#smbespeciation pic.twitter.com/oIVd3GjPza
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On my way to
@SMBE_speciation in Sweden. Excited to be helping lead a hands-on introduction to simulation with#msprime. VERY excited about giving a sneak preview to the stats magic@petrelharp has cooked up in#tskit: it's amazing! -
boys turned into girls
#MsPrime


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Currently being used by
#MsPrime.
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