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These two handlers at the end of your
#Snakemake pipeline are very useful to have!#sciworkflows pic.twitter.com/Dm7mAdyIww
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If
@commonwl had an alternate language frontend that looked more like a regular scripting language, while keeping the ecosystem and interoperability, would you be interested?#sciworkflowsPrikaži ovu nit -
I am happy to announce
#Snakemake 5.7.0. A lot of exciting news follow below!#sciworkflows#reproducibilityPrikaži ovu nit -
Nice analogy about old pipeline code by M Montfort
#nfcamp19#sciworkflows pic.twitter.com/FGcIkj7IvP
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My day has been made reading the lovely post by Tobias Neumann (
@fh_fingolfin) describing using@nextflowio + setting up AWS Batch whilst optimising resources. Many tips & tricks plus ideas on how we can improve the user experience https://t-neumann.github.io/pipelines/AWS-pipeline/ …#sciworkflows -
"Fortunately, says Ewels (
@tallphil), the languages are easy to pick up, and examples are abundant. “Once you’re familiar with it, you get in the habit of using it,” he says. “And then you wonder how you ever lived without it.”"#sciworkflows https://www.nature.com/articles/d41586-019-02619-z … -
Dear
#sciworkflows tweeps, the@Sagebio and@SageSynapse design team is conducting a user survey to better understand scientific computing challenges in the research community. We'd very much appreciate your time (~5 minutes) and input!http://bit.ly/2ZlGAfC -
Beautiful morning in Barcelona as we prepare to start 4 days of
@nextflowio back to back for#nfcamp19. Excited is an understatement!!
#sciworkflows pic.twitter.com/7gVAWWnpBV
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A full house at
#nfcamp19 to hear about the new developments in@nextflowio from@PaoloDiTommaso including how to break up workflows into modules which will enable easier reuse of processes.#sciworkflows pic.twitter.com/hKgd6LTgjB
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#Snakemake has just reached 500 citations! 341 of them in the last two years. This makes on average ~3 new citations (i.e. ~3 new#Snakemake driven published data analyses) per week: https://badge.dimensions.ai/details/id/pub.1018944052 …#sciworkflows#reproducibilityPrikaži ovu nit -
Very interesting and inspirational paper on
#sciworkflows by Samuel Lampa (@smllmp) with a comprehensive comparison of many different tools. Well done!https://twitter.com/smllmp/status/1122072683380920320 … -
#snakemake_wrappers 0.43.0 is released. This is the biggest release so far! It adds lots of tools contributed by the community! Docs: https://snakemake-wrappers.readthedocs.io Release notes: https://github.com/snakemake/snakemake-wrappers/releases/tag/0.43.0 …#sciworkflows#reproducibility -
NBIS provides support and develops new bioinformatics tools. NBIS expert M. Dahlö
@mdahlo and former NBIS expert S. Lampa@smllmp have recently published@scipipe, a new workflow library for managing and developing bioinformatic pipelines#Bioinformatics@golang#sciworkflows -
Putting the final touches on Nextflow Camp. The weather is looking good
(3rd time lucky) so pack your togs and jandals, charge your laptop and get some sleep this weekend. See you all in Barcelona soon! @nextflowio#nfcamp19#sciworkflows -
2-day
#Snakemake workshop/tutorial at the University of Cambridge in January 2020! Learn how to use#Snakemake to ensure#readability,#reproducibility,#scalability,#portability, and#transparency of your data analysis and#sciworkflows: https://training.csx.cam.ac.uk/bioinformatics/event/3108957 … -
Great work by
@smllmp et al. on what looks to be a very impressive platform for#sciworkflows! I'm especially interested in taking a closer read through the intro, which effectively provides a nice mini-review of related tools, languages, and efforts. https://twitter.com/smllmp/status/1122072683380920320 … -
SciPipe: A workflow library for agile development of complex and dynamic bioinformatics pipelines https://academic.oup.com/gigascience/article/8/5/giz044/5480570 …
#sciworkflows -
Excited to be among the list of speakers at this workshop on "Reproducible Research and Modern Data Analysis"
I will be discussing ways to generate reproducible and interactive presentations in RMarkdown #sciworkflows#reproducibility#openscience#rstatspic.twitter.com/apPCtLJoYg
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@sminot Talking about Cost/Benefits of#sciworkflows managers#nfcamp19pic.twitter.com/BKMEdkxgzZ
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Happy to announce
#snakemakewrappers 0.37.1 with new wrappers for mutect, varscan, umis, contributed by the community. Check out unit tested, easy to use building blocks for your snakemake workflows at https://snakemake-wrappers.readthedocs.io#sciworkflows#reproducibility
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