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Finally out: Haplotype Threading: Accurate Polyploid Phasing from Long Reads http://disq.us/t/3lvsppn Very proud.
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Her earlier work actually contained detailed flow charts, so I'll have to blame the lack of code above on space constraints (
#methodsmatter!). This is from the earliest publication I know that describes bioinformatics performed with a computer, in 1962. https://dl.acm.org/citation.cfm?id=1461546 … pic.twitter.com/elQpIsbexW
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These authors write that "Most readers do not read the methods". For the record, I read the methods section of papers. This paper didn't have one. The authors just made stuff up and wrote a
@PLOSCompBiol paper.#methodsmatter. http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005619 … h/t@cecilejanssensPrikaži ovu nit -
First PhD study out! •Non-time-loss incidence depends on the person recording •Time-loss incidence not affected → Beware when interpreting studies using broad injury definitions and multiple recorders
#methodsmatter https://onlinelibrary.wiley.com/doi/10.1111/sms.13427 …@Aspetar@OSTRC1@Aspire_Academypic.twitter.com/4LfEVDrEdc
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Very nice work by Simoneau and colleagues https://doi.org/10.1093/bib/bbz124 … - although, I am getting goose bumps at trying to digest Fig.2 (and this is really not a rant on pie charts
) #MethodsMatterPrikaži ovu nit -
New paper from from Joshua Levin's group! Comprehensive comparative analysis of 5′-end RNA-sequencing methods https://www.nature.com/articles/s41592-018-0014-2 …
#MethodsMatter -
I wonder who introduced Uzzah to the idea that methodology was not important? Any “thinking” person knows transporting the ark on a cart was more progressive and efficient than the outdated means of using poles. Hmmm...
#methodsmatter pic.twitter.com/2UDH52qVfP
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Super excited to organize the Computational Genomics Winter Institute
@UCLA with@anshulkundaje!#savethedate#methodsmatter …http://computationalgenomics.bioinformatics.ucla.edu/programs/2018-cgwi/ … pic.twitter.com/xjvjGu8AgO
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We're thriled to see that
@PacBio officially recommends using#SQANTI for QC of novel isoforms in their new IsoSeq3 pipeline.#MethodsMatter https://bitbucket.org/ConesaLab/sqanti …pic.twitter.com/hkbyKaFIX6
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Benchmarking of tools is an essential element of genomic data science.
#methodsmatter Check out this special issue of@GenomeBiology devoted to benchmark studies!https://twitter.com/stephaniehicks/status/1193256360265310208 … -
Sampling the microbiome is full of instrument error, reagent bias, and biological confounders. So is all research. Use controls, run replicates, quantify your error, and approach all results with skepticism. Just like all research.
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Day after day... this strange jerk of a man tweets out nonsensical statements yet because he has accumulated wealth and power... we are forced to listen...even though the means by which that wealth was attained is criminal.
#MethodsMatter#ImpeachTheMFhttps://twitter.com/realDonaldTrump/status/1190269332623970304 … -
People don't necessarily realize that such citations are important to seek funding to maintain and continue development of such tools/packages. By not doing this, they are hurting the entire scientific community. Give credit where credit is due.
#methodsmatter#rstatshttps://twitter.com/raphg/status/1097922298441392128 … -
It’s deeply concerning that it’s come to this. We can all agree that research software is very important and yet developers struggle to get time and funding to maintain it. Sadly, this is the often norm not the exception for the fate of
#bioinformatics tools.#MethodsMatter pic.twitter.com/56rCMcGfxs
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Very excited that
@PLOSCompBiol is supporting and highlighting the importance of benchmarks. https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.100649 …#methodsmatter#bioinformaticspic.twitter.com/yJBcsm44S3
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Fantastic analysis of how
#ensembl GTF and cDNA FASTA differ; performed by my colleague@LambdaMoses#methodsmatter https://twitter.com/LambdaMoses/status/1223468932322824193 … -
For those studies where batch is an unavoidable factor (not certain if it’s the case here, will read when I can get past the paywall), batch correction is an important and often overlooked component of data analysis...and this speaks to
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If you are interested in analyzing
#SingleCell#RNAseq data in#Bioconductor using#rstats, please check out our paper Orchestrating single-cell analysis (OSCA) with@Bioconductor that was published in@naturemethods this week!#genomics#scRNAseq#dataviz#methodsmatter https://twitter.com/naturemethods/status/1201562338043797504 …
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The method section in
@alizaluft's article, "Toward a Dynamic Theory of Action at the Micro Level of Genocide: Killing, Desistance, and Saving in 1994 Rwanda" is so good that I had my intro to qual methods class read it out loud today.#MethodsMatter
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