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Meet
#EBP member Professor Mark Blaxter Mark recently joined@sangerinstitute to lead the new Tree of Life Programme, an EBP aligned project that aims to deliver tens of thousands of high-quality#genomes from across the diversity of#eukaryotes https://www.sanger.ac.uk/science/programmes/tree-of-life …pic.twitter.com/RXba4hiEza
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We’ve designed a user-friendly
#visualisation tool for#analytics of#NGS#data using a graphical#userinterface.#BRIG - a FREE cross-platform#app for comparing#genomes. Download http://brig.sourceforge.net Image https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0026578 … Cite https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3163573/ … [939 citations]pic.twitter.com/lq1ovk04zD
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An introductory
#news update from the Sanchez-Baracaldo lab group! Excited to be helping out with work on such a range of#genomes https://sanchezbaracaldo.wordpress.com/2019/03/12/new-strains-arrive-from-culture-collection-yerseke/ … -
Pathogen
#genomes can inform public health interventions. However, limited#genomes has hindered detailed molecular epidemiology studies in Africa despite the high disease burden. See our#Kenya#influenza A virus whole-genome sequencing method & analysis https://bit.ly/2QOu43e pic.twitter.com/G9LUi7ljZV -
What makes a jellyfish https://www.nature.com/articles/s41559-019-0872-8 … by
@christyschnitz 3 studies presenting#genomes from different life stages of nearly all major lineages of#medusozoans present radically different gene expression profiles between life cycle stages and many medusa-specific genes.pic.twitter.com/pblgQhP9hA
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The three lucky
#caecilian species with#genomes known to science https://vgp.github.io/genomeark/Rhinatrema_bivittatum/ … • https://vgp.github.io/genomeark/Geotrypetes_seraphini/ … • https://vgp.github.io/genomeark/Microcaecilia_unicolor/ …pic.twitter.com/1tcNJmXM8L
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Genome engineers made more than 13,000
#CRISPR edits in a single cell#genetica#genomes@techreviewhttps://www.technologyreview.com/s/613179/genome-engineers-made-more-than-13000-crispr-edits-in-a-single-cell/ … -
Nice preprint on a new promising method to estimate
#population decline using#genomes !@ekerde@ISYEB_UMR@amaury_upmc@Le_Museum@cdf1530https://www.biorxiv.org/content/10.1101/703595v1 … -
Another of our
#visualisation tools for#analytics of#NGS#data using a graphical#userinterface.#Easyfig - a#Python#app for linear comparisons of multiple#genomes. Download http://mjsull.github.io/Easyfig/ Image https://www.pnas.org/content/111/15/5694 … Cite https://www.ncbi.nlm.nih.gov/m/pubmed/21278367/ … [635 citations]pic.twitter.com/iGnrebnOFI
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.
@dianalopez430 and@Analeiv92304747 reviewing NGS-results obtained with the mighty MinION: From symptoms to single colonies to (a-bit-of-a-puzzle-but-we are-working-on-it) complete bacterial#genomes@nanopore@CIAT_@Limenian@RTB_CGIAR@JuanMan38725214@MyCIATpic.twitter.com/RSyuc9byKH
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Heyyyy got some
#chloroplast#genomes you want to assemble? Check out Fast-Plast by the wonderful@mrmckain Takes in Illumina reads, produces a complete cp genome (in my case, at least). Super fast. https://github.com/mrmckain/Fast-Plast … (UGA folks, it's installed on Sapelo2) -
#8: Tool developed by
@bbglab in Barcelona uses accumulated knowledge from#cancer#genomes to suggest cancer drivers in newly sequenced tumors http://bit.ly/2E3UhRO pic.twitter.com/eEfEOzlK5C
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What are the implications of genome reanalysis? When we interpreted nearly 5000 disease-associated genes in
#MedSeq and re-analyzed them after a 2+ years, we saw 22% of the variant interpretations change! http://bit.ly/2ITnzZ3@HeidiRehm@AJHGNews#genomes pic.twitter.com/Giir3xIEGd
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Finally out our work on
#virophages! https://rdcu.be/bYVFV 328 new HQ multihabitat#genomes across 27 clades from (including#humangut). Kudos to@kyrpides @jingliezhou@simroux_virus @stephennayfach@g_pavlopoulos@frederikschu@twoyke@sgtringe@mcmahonlab@IMG_DATA@jgiPrikaži ovu nit -
.
@WUBiology is raising funds to purchase equipment that can sequence entire#genomes. Click the link below to learn more about this project then return on Feb. 6,@WashburnUniv Day of Giving. Your gift can help us reach our $5,000 goal#ALLforWU https://washburngivingday.org/amb/biologyDNA -
Congratulations Karla Kirkegaard of
@StanfordMed, newly elected#NASmember!#NAS156#ViralDisease#genomes http://www.nasonline.org/news-and-multimedia/news/2019-nas-election.html … -
PhD opportunity to understand how
#genomes respond to sexual systen transitions using Triops. Working at@evohull supervised by myself,@calvia and@danieljeffares funded by@NERCscience as part of@PanoramaDTP Apply before Monday 6th January 2020https://panorama-dtp.ac.uk/research/how-do-genomes-respond-to-sexual-system-transitions/ … -
My viewpoint
@bmj_latest today on#NHS proposal to do#genomes on healthy people for "personalised health report". Weighing benefits v harms https://www.bmj.com/content/364/bmj.l789.full?ijkey=0917YkqGelyTQgi&keytype=ref …@wiserhealthcare@raymoynihan@PaulGlasziou@jodieingles27@rdbagnall@AusGenomics@TiffBoughtwood@NavjoytLadherpic.twitter.com/4vReGtkpa4
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5 new
#Symbiodinium#genomes and the 1st study with comparisons at order, family, genus and species levels for#dinoflagellates. Have a look at our pre-print@biorxivpreprint: http://bit.ly/2IF0MQd@dorkyM@timstep1383@Yibi00733984@SarahShahansha@AMohamed85@IMBatUQpic.twitter.com/ZrznsvOUzH
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The
@YouTube playlist for my@MIT#ComputationalBiology:#Genomes,#Networks,#Evolution,#Health course aka.#MachineLearning in#Genomics#Fall2019 lectures is here: https://www.youtube.com/playlist?list=PLypiXJdtIca6U5uQOCHjP9Op3gpa177fK … (18 lectures and growing)Prikaži ovu nit
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