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Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2446-1 …
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New paper out: Parameter estimation in models of biological oscillators - how to avoid common pitfalls https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2630-y …
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A new tool to help in the design of epigenome-wide studies pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS) https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2804-7 …
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Learning mutational graphs of individual tumour evolution from single-cell and multi-region sequencing data https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2795-4 …
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Pleased to share our recently published article on hypothetical proteins
@BMC_series. A model to predict the function of hypothetical proteins through a nine-point classification scoring schema https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2554-y …#bmcbioinformatics -
FELLA: an R package to enrich metabolomics data https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2487-5 …
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Comparing results of MCS vs Evolutionary Algorithms in strain optimization. Check out our recent work in BMC Bioinformatics: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2934-y …
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Our iDEP paper is finally out. In addition to the source code in Github, all the supporting databases are available on Zenodo. iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2486-6 …
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metamicrobiomeR: an R package for analysis of microbiome relative abundance data using zero-inflated beta GAMLSS and meta-analysis across studies using random effects models https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2744-2 …
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AMYCO: evaluation of mutational impact on prion-like proteins aggregation propensity https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2601-3 …
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Our paper on tailoring knowledge graph semantic similarity for supervised learning.
#semanticweb#MachineLearning#bioinformatics#geneticprogramming#knowledgegraphs#BMCBioinformatics https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-3296-1 … -
RIP-Chip analysis supports different roles for AGO2 and GW182 proteins in recruiting and processing microRNA targets https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2683-y …
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miRspongeR: an R/Bioconductor package for the identification and analysis of miRNA sponge interaction networks and modules https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2861-y …
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Conrats to
@shyamrallapalli for getting this paper out. Rapid fine mapping of causative mutations from sets of unordered, contig-sized fragments of genome sequence https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2515-5 …#bmcbioinformatics -
RAFTS3G: an efficient and versatile clustering software to analyses in large protein datasets https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2973-4 …
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A nearest-neighbors network model for sequence data reveals new insight into genotype distribution of a pathogen https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2453-2 …
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What is better than begining the year analysing the mutational impact in the aggregation propensity of prion-like proteins? Find how in
@BMC_Bioinforma AMYCO: evaluation of mutational impact on prion-like proteins aggregation propensity https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2601-3 …#bmcbioinformatics -
Phylogenetic convolutional neural networks in metagenomics https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2033-5 …
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Great to see this paper out in 2019 that was on
@biorxivpreprint in 2017 - just prefer spelling of homoeolog over homeolog
A likelihood ratio test for changes in homeolog expression bias https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2709-5 … #bmcbioinformatics -
Towards a supervised classification of neocortical interneuron morphologies https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2470-1 …
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