Hammer Lab

@hammer_lab

We're a lab working to understand and improve the immune response to cancer at

Vrijeme pridruživanja: lipanj 2014.

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  1. 5. stu 2018.

    Our lab member Eric Czech will present this work at on Saturday. The source code is available at . If you're interested in GPU-accelerated open source software for the analysis of multiplex tissue imaging data, we'd appreciate your feedback!

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    13. lip 2018.

    This is what we have been working on at for the last few months: Human Primary T Cells: A Practical Guide - Live document: - Code/data: - Protocols: cc: @PINPINPINN

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  3. 10. sij 2018.

    A few of our former lab members have formed a new lab to continue their work on open source software for neoantigen vaccines. Go follow them at !

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  4. 10. sij 2018.

    New preprint! Prohlatype: A Probabilistic Framework for HLA Typing by

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    21. pro 2017.

    We just released MHCflurry 1.0, our MHC I ligand prediction package. 20% more alleles, over 10X faster, docs, and an accuracy boost. Happy predicting!

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  6. 11. pro 2017.

    Introducing spark-bam, a foundational library that enables the distributed processing of aligned reads with , by :

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  7. 7. stu 2017.

    New preprint from on how our lab uses to manage complex bioinformatics workflows on cloud, Hadoop, and HPC environments

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  8. 14. kol 2017.

    We've posted a preprint that describes the open source software powering the neoantigen vaccine trial described at

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  9. 10. kol 2017.
    Odgovor korisnicima

    File issues and contribute code at

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  10. 10. kol 2017.
    Odgovor korisnicima

    Download the library from PyPI at

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  11. 10. kol 2017.
    Odgovor korisnicima

    Read the preprint, "MHCflurry: open-source class I MHC binding affinity prediction”, at

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  12. 10. kol 2017.
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  13. 26. lip 2017.

    Introducing SurvivalStan, with an epic introduction to Bayesian survival analysis with , by :

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  14. 23. lip 2017.

    A broad but shallow review of informatics in cancer immunotherapy:

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  15. 19. lip 2017.
    Odgovor korisnicima i sljedećem broju korisnika:

    You can too with Pageant, our Apache-licensed Parallel Genomic Analysis Toolkit:

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  16. 19. lip 2017.

    Watch: shows how our lab uses on to process thousands of BAMs in a few hours

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  17. 7. lip 2017.
    Odgovor korisniku/ci

    For the Apache 2.0-licensed Vaxrank code, check out

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  18. 7. lip 2017.
    Odgovor korisniku/ci

    We use Vaxrank in our clinical trial that’s actively recruiting patients; for more on the trial see

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  19. 7. lip 2017.

    New preprint! Vaxrank: A Computational Tool For Designing Personalized Cancer Vaccines

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  20. 5. lip 2017.

    We’re quite proud of this paper! One reviewer: “It sets the bar for ... biomarker analyses in patients treated with checkpoint inhibitors”

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