Greg Caporaso  

@gregcaporaso

; PI ; concerned citizen & scientist;

Flagstaff, AZ
caporasolab.us
Joined September 2011
23 Photos and videos Photos and videos

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  1. Retweeted
    May 19

    This week in the with QIIME 2 free, online workshop - it's longitudinal analysis time! (1/3)

    1 reply 22 retweets 56 likes
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  2. Retweeted
    May 13

    This week's topic on the with QIIME 2 free online workshop is supervised classification! (1/2)

    1 reply 13 retweets 43 likes
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  3. May 6

    Access to through the graphical user interface - pretty exciting stuff! Be sure to check this out if you want to use QIIME 2, but are not excited about working on the command line.

    Platforms screenshot
    Galaxy Platform News: Protologger, , , , and a new Platforms YouTube channel
    3 replies 37 retweets 95 likes
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  4. Retweeted
    May 4

    Just a (naively hopeful) reminder when benchmarking tools to label your figs based on the actual software you used and not the wrapper software. ex. saying we benchmarked against means very little, just label the actual plugin used for the benchmark.

    7 retweets 21 likes
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  5. Retweeted
    May 4

    It's Tuesday again! The topic of the week in the with QIIME 2 free online workshop is differential abundance testing. (1/3)

    1 reply 15 retweets 32 likes
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  6. Retweeted
    May 3

    Do you have a manuscript relevant to the microbiome and cancer? Traci Testerman, , and I are co-editing an issue of on "Microbe-driven malignancies: mechanisms, prevention, and treatment." Here's the submission link:

    5 retweets 14 likes
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  7. Retweeted
    Apr 30

    Hey , why won’t you let a fully vaccinated spouse (me) visit their sick husband? He’s been there four nights and counting and the stress of not seeing each other on top of an illness is extremely taxing. Please change your policies.

    6 replies 2 retweets 8 likes
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  8. Retweeted
    Apr 28

    This week in the with QIIME 2 free online workshop: (1/3)

    3 replies 12 retweets 30 likes
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  9. Apr 22

    Ever wanted to use through ? You can now - try it out and give us feedback!

    The latest version of (2021.4) is now available! Changes include a new alpha-release interface for using QIIME 2 in ! We have also upgraded to Python 3.8, improved several visualizations, and other misc. fixes and improvements.
    10 retweets 24 likes
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  10. Retweeted
    Apr 21

    Several new videos were released on the QIIME 2 YouTube channel over the last couple of weeks as part of the with QIIME 2 online workshop! (1/4)

    3 replies 33 retweets 82 likes
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  11. Retweeted
    Apr 7

    This week on the with QIIME 2 online workshop introduces rarefaction () and discusses how to select an even sampling depth for diversity calculations (). Enjoy!

    17 retweets 59 likes
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  12. Retweeted
    Mar 30

    It's Tuesday again, and that means another installment of the with QIIME 2 online workshop!

    1 reply 11 retweets 37 likes
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  13. Retweeted
    Mar 24

    In this week's installment of the With free online workshop, teaches phylogenetic reconstruction (), and shows how to build trees for diversity analysis (). Enjoy!

    2 replies 21 retweets 56 likes
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  14. Retweeted
    Mar 18

    Trailing a(nother) recent online discussion of ASVs vs OTUs, here is a video I made for a recent workshop introducing the difference between both and suggest that the 2 need not be exclusive. I propose starting with ASVs and choose to cluster or not based on your question/data.

    In this week's installment of the With free online workshop and return to discuss denoising of sequence data, OTUs versus ASVs, and more!
    1 reply 4 retweets 18 likes
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  15. Retweeted
    Mar 19

    Congrats to , one of our stellar QIIME 2 workshop instructors! 🎉🎉🎉

    I am PhDone!!!! I am so happy to announce that I am now Dr Belk! Thanks so much to everyone that’s put up with me and supported me for the last 4 years, it’s been a crazy ride but I did it! And of course thanks to my incredible advisor Jessica !
    1 retweet 11 likes
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  16. Mar 18

    Congrats !

    Best week I've had in a while! My grad student, Whitney Holeva-Eklund, has been selected for an NIH F31 award (2nd ever for ) and I just found out that I am getting promoted to Associate Professor with Tenure!
    1 reply 2 likes
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  17. Retweeted
    Mar 17

    The latest mSystems brings to the public a new interactive web tool for visualizing large-scale phylogenetic trees - Read all about it:

    19 retweets 44 likes
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  18. Retweeted
    Mar 11

    In this week's installment of the With free online workshop present a lecture on importing and demultiplexing with QIIME 2... (1/2)

    1 reply 10 retweets 37 likes
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  19. Retweeted
    Mar 3

    In this week's installment of the workshop, available now, presents on DNA extraction techniques for microbiome sequencing using KingFisher and QIAGEN AllPrep.

    10 retweets 42 likes
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  20. Retweeted
    Feb 24

    The latest version of (2021.2) is now available! The first release of 2021 includes bug fixes, a new ILR Ordination method in q2-gneiss, improved table filtering controls, and much more! Thanks so much for all of the contributions!

    2 replies 20 retweets 61 likes
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