See the thing about pop gen is that the underlying data is a graph, so in theory the paper razib mentions exploits that nature very well. But sometimes the linear pca type thing works great
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also sometimes PCA can be interpreted as saying something about mean coalescent times, useful in a lot of situationshttp://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1000686 …
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Cause it works
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