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Vertebrate Genomes Project (VGP) proslijedio/la je Tweet
Ensembl 99 and
@ensemblgenomes 46 have now been released!
38 new vertebrate species, 2 dog breeds and 4 updated #genomes including#data from@genomeark
New #plant species

Updated human variation data
Read more in our latest blog post:
https://buff.ly/35ZTf7s pic.twitter.com/hfNxCAYbqv
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Closing out
@PAGmeeting VGP Workshop w/Michaela West of@gentyane + Claudio Ciofi of U Florence Italy sharing their stories as we look to expand the VGP network & group discussion on next steps for completing Phase 1#PAGXXVIII thanks for joining us!@erichjarvis@rhskrausPrikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Vertebrate Genomes Project (VGP) proslijedio/la je Tweet
@giulio_formenti proposes an assembly process that will be evaluated by AI processes that will seek optimal parameters in several steps (e.g. purging duplicates, scaffolding)@genomeark#PAGXXVIII#PAG2020Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Vertebrate Genomes Project (VGP) proslijedio/la je Tweet
De novo reference genomes and...
#AI?@giulio_formenti takes a look towards the future of the VGP and suggests machine learning may play an important role in generating the highest possible quality reference genomes.@genomeark@PAGmeetingHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
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Relevant preprints: https://www.biorxiv.org/content/10.1101/855049v1 … and https://www.biorxiv.org/content/10.1101/810341v1 …
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Humans are vertebrates too!
@BenedictPaten gives overview on org + goals for the Human Pangenome Project, which aims to capture the full extent of human diversity from a set of 350 persons@khmiga@aphillippy@ArangRhie@kerstin_howe@sergekoren@ofedrigo@erichjarvis#PAGXXVIIIPrikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Biological discovery talks
@PAGmeeting by@phillipmorin4 and@DushyantSBaghel on critically endangered species, vaquita (less than 20 remaining) and Great Indian bustard (only 150 remaining), respectively#PAGXXVIII@LeoDiCaprio@erichjarvispic.twitter.com/Fyezt4DiPI
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TOGO uses genomic context to infer orthologs -> a framework for identifying lost + dup genes; possibility to scale to 100-1000s of genomes. Learn more about its appplication in this paper by presenting author
@hillermich &@bat1kgenomes colleagueshttps://www.biorxiv.org/content/10.1101/836874v1 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
The afternoon session
@PAGmeeting VGP workshop kicks off w/a talk by Chul Lee about the amount and types of erroneous genes in old and new VGP assemblies, e.g., false gene gains, false gene losses...@erichjarvis#PAGXXVIIIHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Vertebrate Genomes Project (VGP) proslijedio/la je Tweet
Listen to
@kerstin_howe for 10 minutes and you’ll never trust a genome assembly again. So ... many ... errors. Great work by her curation team at@sangerinstitute fixing@genomeark assemblies and guiding assembly method improvements#PAGXXVIIIHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Next,
@ArangRhie discusses a method for reference free evaluation of genome assemblies - stay tuned for more details in the next couple of months!@aphillippy@sergekoren@erichjarvis@PAGmeeting@EBPgenome#PAGXXVIIIHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
*between
@PacBio HiFi vs...Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Proposal for scalable + cross-platform compatible pipelines by Chai/
@dnanexus to deal with issues of redundancy of effort, reproducibility of platforms, & update speed@PAGmeeting#PAGXXVIIIhttps://twitter.com/infoecho/status/1217531330704969728 …
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The ongoing assembly problem: repeats are long, spreads are short.
@aphillippy compares accuracy vs length between@PAGmeeting HiFi vs@nanopore Ultra-long sequencing for human genome assembly@PAGmeeting#PAGXXVIII@sergekoren@ArangRhie@khmiga@erichjarvis@EBPgenomepic.twitter.com/je1Uzx8K1y
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Sample prep prior to library prep & sequencing vital to final genome!Great presentation
@PAGmeeting by@JenBalacco on diff conditions for sample prep incld preservation, tissue types, temps, shipping, DNA extraction, etc for various taxas#PAGXXVIII@ofedrigo@erichjarvispic.twitter.com/9Mw7fxEAIL
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The
@PAGmeeting VGP workshop is getting started w/@erichjarvis giving a quick history leading to current status of ~124 ordinal species in progress & next steps to complete Phase 1#PAGXXVIII come join us! Terrace room, Handlery Hotelpic.twitter.com/wxpbG7kss6 – mjesto: Handlery Hotel San Diego
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UPDATE: our VGP workshop has been relocated to the Terrace room at the Handlery Hotel, start time still 10am
@erichjarvis@EBPgenome@aphillippy@rhskraus@ofedrigoHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Full VGP workshop agenda here http://bit.ly/38i5cHh including talks from
@erichjarvis@JenBalacco@aphillippy@ArangRhie@dnanexus@kerstin_howe@hillermich@NOAA@phillipmorin4@DushyantSBaghel@mcshane@BenedictPaten@giulio_formenti & othershttps://twitter.com/aphillippy/status/1216863649689522176 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi
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