I've been there. Solidarity.
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Thanks! My system (which has 128GB ram) is still recovering. It was a we're going into swap-space level mistake.
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You might want to try setting a memory ulimit. And you might want to just disable your swap space, on a system with that much RAM; it probably isn't helping.
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Good point! I've never had a high performance workstation until this one, so I've never thought about performance tuning that way.
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have you tried scipy.sparse ?
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Yes. Although I always forget the various tradeoffs. This particular matrix was dense though. (But, I can decompose it by year, so not intractable.)
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Just curious... Why did you need to transpose?
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