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In the case of a piece of music, "how does it work?" will make you look for the key, the different voices, the rules. That's the easy part. "Why" leads you to ask what exactly about the piece makes you feel the way you feel. It will require you to understand your own mind.
A classic example is neuroscience: it is very much in the business of asking, "how does the brain work?", and it has no power to answer the actually important question, "why does the brain work?"...
The "how" stay at the level of superficial observations. The "why" gets to the heart of the system. It requires a full understanding not only of the system itself, but of the context in which it lives. It requires you to follow the thread of purpose that drove its emergence.
I've always wonder 'can a brain understand itself.' It seems like there a paradox buried in there somewhere.
But why is sometimes a fallacy. There is no end to why. You will have to make delineation at a scale. For neuroscience it might be the cellular or atomic. Otherwise you end up with asking why is the universe. So at some point how will have to suffice.
The brain evolved to move the body it is in. That is what brains are for.
Why does a neural network work? No one has a clue how they work??
This is just about asking the right "how". The deeper "how". A true "why" cannot be answered as it leads to a philosophical and existential singularity. I don't mind some good intellectual threads but Aristotle described this in writing 2400 years ago..
To understand a brain a higher 'brain' is needed!
Beautiful :)
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