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eigenrobot's profile
eigenrobot
eigenrobot
eigenrobot
@eigenrobot

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eigenrobot

@eigenrobot

robot. friend.

eigenrobot.substack.com
Joined July 2013

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    1. eigenrobot‏ @eigenrobot 3 Dec 2019

      ok finished working for the day time to write a script to generate several thousand children

      3 replies 2 retweets 41 likes
      Show this thread
      eigenrobot‏ @eigenrobot 3 Dec 2019

      if anyone wants to follow along at home,https://github.com/eigenrobot/robo-niggurath …

      10:55 PM - 3 Dec 2019
      • 2 Retweets
      • 14 Likes
      • halvorz ¯\_(ツ)_/¯ Dedicating Ruckus \\GNOME WARRIOR |Fistlosopher| MODE// Brnai Ashritt (📜, 📜) The Mall Krampus (wannabe) Ƀreaker of (the Bad) Loops Charles DeGlopper JR Thatcher 📈 Dexter Paz, Eggnog Esotericist
      5 replies 2 retweets 14 likes
        1. New conversation
        2. eigenrobot‏ @eigenrobot 3 Dec 2019

          hmmmmmmm wonder if its the case that 23andMe raw data have consistent orderings of chromosomal genotype across chromosomes in their genotype column gonna be pretty dysfunctional if not per ushe data cleaning and formatting takes up 90% of my time

          1 reply 1 retweet 5 likes
          Show this thread
        3. eigenrobot‏ @eigenrobot 3 Dec 2019

          er 90% of time exclusive of configuring my stupid ide and system generally

          2 replies 1 retweet 5 likes
          Show this thread
        4. eigenrobot‏ @eigenrobot 3 Dec 2019

          well fuck looks like between chip v2 and chip v5 @23andMe altered their nomenclature such that there's only an intersection of about 20% of rsids across chips hmmm

          1 reply 1 retweet 3 likes
          Show this thread
        5. eigenrobot‏ @eigenrobot 3 Dec 2019

          possibilities: 1. @23andMe are just legitimately measuring a completely different set of SNPs today (why would they do this? FDA mandate?) 2. its is actually a nomenclature shift per above tweet, iirc theres variation in naming conventions but havent thought about this in years

          4 replies 1 retweet 5 likes
          Show this thread
        6. eigenrobot‏ @eigenrobot 3 Dec 2019

          hmmmmm new points of curiosity (i) does http://impute.me  permit whole genome analysis (ii) does @VeritasGenetics permit a data download after sequencing

          1 reply 1 retweet 5 likes
          Show this thread
        7. End of conversation
        1. New conversation
        2. Marco‏ @marcoJcosta 3 Dec 2019
          Replying to @eigenrobot

          PRs incoming

          1 reply 0 retweets 1 like
        3. Marco‏ @marcoJcosta 3 Dec 2019
          Replying to @marcoJcosta @eigenrobot

          actually scratch that, it came out way less rude in my head

          0 replies 0 retweets 1 like
        4. End of conversation
        1. New conversation
        2. Not Bill Clinton (I Feel/Your Pain)‏ @notPotus42 3 Dec 2019
          Replying to @eigenrobot

          WHERE ARE YOUR TESTS?!??!

          1 reply 0 retweets 1 like
        3. eigenrobot‏ @eigenrobot 3 Dec 2019
          Replying to @notPotus42

          te . . . st? what do you think i am some kind of software engineer

          0 replies 0 retweets 2 likes
        4. End of conversation
        1. New conversation
        2. beau‏ @beaugunderson 4 Dec 2019
          Replying to @eigenrobot

          one suggestion: use this libraryhttps://pypi.org/project/snps/ 

          1 reply 0 retweets 2 likes
        3. eigenrobot‏ @eigenrobot 4 Dec 2019
          Replying to @beaugunderson

          Oh god dammit I mean great but also Oh well

          0 replies 0 retweets 2 likes
        4. End of conversation

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