Henk den Bakker

@den_bakker

Assistant Professor at the University of Georgia; microbial taxonomy, population genomics, microbiome research and bioinformatics. All views are my own.

Joined October 2012
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  1. Retweeted
    Jun 8

    V happy to see this finally out. Isaac Turner's work: multi colour de bruijn graphs can recover full read info.

    2 replies 32 retweets 22 likes
  2. Retweeted
    May 23

    fellowship in & Thomson groups: Dynamics of mobile features in

    1 retweet 1 like
  3. Retweeted
    May 22

    treeWAS: Phylogenetic Method for microbial GWAS studies accounts for pop and recomb

    27 retweets 26 likes
  4. Retweeted
    Apr 5

    SINAPS: Prediction of microbial traits from marker gene sequences

    6 retweets 9 likes
  5. Retweeted
    Apr 2

    Latest addition to : wub, tools and software library developed by

    12 retweets 16 likes
  6. Retweeted
    Mar 28

    Plasmid Profiler: Comparative Analysis of Plasmid Content in WGS Data

    3 retweets 5 likes
  7. Retweeted
    Mar 28

    Announcing Finch! Open sourcing our Rust Mash implementation. Fast sketches, count histograms, better filtering:

    1 reply 22 retweets 28 likes
  8. Retweeted
    Mar 25

    computers are fast ()

    32 replies 620 retweets 1,087 likes
  9. Retweeted
    Mar 24

    Do you need to describe food in a standardized way? If so, here's a new resource for you! FoodOn, THE Food Ontology

    6 retweets 6 likes
  10. Retweeted
    Mar 23

    The demise of fluoroquinolones as first-line treatment for in south Asia. Guidelines must change. See

    14 retweets 9 likes
  11. Retweeted
    Mar 22

    Pan-genome and phylogeny of Bacillus cereus sensu lato

    3 retweets 2 likes
  12. Retweeted
    Mar 22

    TPOT 0.7 is out, now with multiprocessing support & a fully customizable operator set.

    50 retweets 63 likes
  13. Retweeted
    Mar 23

    I must read this - long live reference-free variant callers!

    Simulating effects on phylogeny of reference genome and SNP calling choices. Work w/ & colleagues at FDA.
    6 retweets 17 likes
  14. Mar 23

    Severe infections emerge from the microbiome by adaptive evolution

    1 like
  15. Mar 23

    Phandango: an interactive viewer for bacterial population genomics.

    1 retweet
  16. Retweeted
    Mar 21

    PYANI v0.2.2 for average nucleotide identity of large genome sets also available at PyPI:

    12 retweets 14 likes
  17. Retweeted
    Mar 21

    : Resolving host–pathogen interactions by dual RNA-seq

    25 retweets 30 likes
  18. Retweeted
    Mar 17

    Comparison Of Multi-locus Sequence Typing Software For Next Generation Sequencing Data

    25 retweets 22 likes
  19. Retweeted
    Mar 19

    This is awful

    BREAKING: Congress fast-tracks resolution to allow internet providers to sell consumer data without permission
    16 retweets 11 likes
  20. Retweeted
    Mar 17

    1926–2016: 90 Years of listeriology - meeting report

    13 retweets 14 likes

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