Daniel Bojar

@daniel_bojar

& Postdoc Collins lab | Heterodox | Conceptual Research | Insular Interests |

Boston, United States
Vrijeme pridruživanja: travanj 2017.

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  1. Prikvačeni tweet
    12. sij

    Super happy to present recent work with & Jim Collins, building a deep learning-based language model for the last remaining biopolymer after DNA, RNA, and proteins: 1/4

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  2. 31. sij

    Did not renew the lease on my flat & already had five(!) visits in the span of one week. Now here's the thing: my lease runs out in 7 MONTHS. And it gets worse: communication via text message, barely 24h heads-up, viewings on the weekend, etc The hell is wrong with this system?

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  3. proslijedio/la je Tweet
    30. sij

    Check our our foray into tools to control lipid signaling, a super cool story led by , just published online at ! Twitter thread/synopsis follows:

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  4. 30. sij

    Shoutout to my former co-workers Krzysztof Krawczyk, , & Hyojin Kim for their great work rewiring a whole set of mammalian signaling pathways to control expression of endogenous genes via dCas9 constructs!

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  5. 30. sij

    Thanks for giving me the opportunity to present & looking forward to the next presentations! Still a long way to go for glycans & machine learning but I'm sure it will be an exciting journey!

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  6. 28. sij

    This may be super naive but are there classes of E coli strains? (e.g. are K-12 and K-13 in the K class?) Or are they completely distinct/unorganized and O123 is not more similar to O124 than to, say, EH100?

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  7. 27. sij

    Look on my works, ye mighty and despair! Did I just spend hours drawing a snake in Illustrator? Yes. Was it worth it? 💯, would snake again.

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  8. 26. sij

    Here's your periodic reminder that this clock was at 7 minutes to midnight during the Cuban missile crisis. At this point, it's no more than a decidedly unscientific instrument of fearmongering, creating numbness by constant terror. Hope spurs to action, fear merely paralyzes.

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  9. 25. sij
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  10. proslijedio/la je Tweet
    24. sij

    Excited to share our latest pre-print🎉 - a framework for low-N protein engineering with data-efficient deep learning! Had a blast working with brilliant and . Thread (1/7)

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  11. proslijedio/la je Tweet
    14. sij

    A short and sweet ;) read. So little we understand about glycobio but a major limiting factor for therapeutic dev. Also gets relatively little academic attention (vs DNA/RNA/proteins), but prob lots of siloed industry knowledge Tools like these democratize their understanding!

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  12. proslijedio/la je Tweet
    13. sij

    Glycans finally join proteins, DNA, and RNA in getting the language model treatment. Great work by and Jim Collins. Even better, their model is named SweetTalk.

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  13. 12. sij

    We are far from done in this space and have really exciting stuff in the works, so stay tuned & read the ! If you think this could be helpful to your work, please reach out; we want this to last and make an impact! 4/4

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  14. 12. sij

    We make thousands and thousands of painstakingly curated glycan sequences available, along with glycan embeddings, trained models for predicting glycan immunogenicity etc., and of course the code for it all, hopefully fueling further advances! 3/4

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  15. 12. sij

    Glycans have it all: dizzying diversity, spectacular sparsity, big branches, and an incredible importance to all of biology. Which is why we used my one true talent - naming things - and created SweetTalk, a first step toward predictive . 2/4

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  16. 11. sij

    I'm also STILL battling business books, recommended to me because I read one book on Wall Street in 2018

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  17. 11. sij

    Me: adds one cookbook to 260 non-cookbooks in my reading list Recommendation system: hOw AbOuT 50 mOrE cOoKbOoKs Seriously, for what do we even have a whole generation of brilliant machine learning people in ads / recommendation?

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  18. 10. sij

    Just submitted the first paper from my postdoc, stay tuned for the version in a few days!

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  19. proslijedio/la je Tweet
    27. pro 2019.

    Amazing article about the failure of the amyloid hypothesis of Alzheimer’s Disease, and the groupthink that apparently shut down new ideas. What do my Alzheimer’s-research pals think of this?

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  20. 28. pro 2019.

    I was today years old when I found out that healthy human brains have a substantial fraction of cells that lost or gained a whole chromosome. That's why I love biology.

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