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CATMAID proslijedio/la je Tweet
Excited to share our
@biorxivpreprint:#connectomics reconstruction of olfactory circuits in the#Drosophila brain led by@as_bates@MRC_LMB,@uni_matrix@martamcosta2@CamZoology. Collaboration with@ddavi,@ScottishWaddell, Gerry Rubin@HHMIJanelia 1/12 https://www.biorxiv.org/content/10.1101/2020.01.19.911453v1 …pic.twitter.com/HxzhfWT5Pt
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CATMAID proslijedio/la je Tweet
Building on previous work from
@zhihaozheng,@dddavi et al we reconstructed, identified and analysed all 346 olfactory projection neurons (PNs) using@catmaid. ~2-3x more PNs than previously reported! 2/12pic.twitter.com/Yc7bCMhaawHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
CATMAID proslijedio/la je Tweet
Beautiful! And a big collaborative effort in a single
@catmaid setup with ~275 users who created ~44MM nodes that make up ~1.2MM neurons + fragments (= ~10.7m!), connected through currently ~1.1MM synaptic nodes. All software open source, relying on@PostgreSQL +@djangoproject.https://twitter.com/ScottishWaddell/status/1179121112548020226 …
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CATMAID proslijedio/la je Tweet
Thanks to comments by Jürgen Rybak and Lydia Gruber at
@MPI_CE I added simple absolute polyadic synapse coloring to@catmaid. It color-codes the number of postysynapses and sometimes reveals small patterns, like in these Drosophila larva L1 Kenyon Cells traced by@EichlerKathi.pic.twitter.com/wnqBgxvzvq
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CATMAID proslijedio/la je Tweet
Ever wanted to stand inside a mushroom body? Thanks to
@CATMAID,#webvr (via Firefox@mozillareality), and a snow day at Janelia this week that left me cooped up with a Samsung Odyssey+, you can. Drosophila larva connectome reconstruction courtesy@albertcardona@EichlerKathipic.twitter.com/apdghMExDGPrikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
CATMAID proslijedio/la je Tweet
Projecting neurons reconstructed in ssTEM of one Drosophila larva into FIBSEM of another. Different animal, different microscopy, different orientation, same great
@CATMAID taste. Enabled by awesome federation tools from@tomkazimierspic.twitter.com/suNorCIxlKHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
CATMAID proslijedio/la je Tweet
The next
@catmaid release adds integrated NBLAST. It allows similarity ranking between neurons, landmark transformed neurons and point clouds (e.g. from LM data) to help find/match/identify neurons plus LM data. Thanks to@gsxej and others for the useful R nat.nblast ref. impl.!pic.twitter.com/RARcK80fX1
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CATMAID proslijedio/la je Tweet
1 day left to register for
#I2K Teaser: Neuronal circuit mapping & analysis with@catmaid -- circuit graphs, Venn diagrams of synaptic partners, 3D morphology visualizations, arbor synapse distrib., etc. This and more from my father,@albertcardona, at https://www.embl.de/training/events/2018/IMJ18-01/ …pic.twitter.com/eJR8siRh4k
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CATMAID proslijedio/la je Tweet
This work https://www.biorxiv.org/content/early/2018/07/25/376384 … by
@BogovicJohn et al. includes an automatic registration between the new JRC 2018 Drosophila brain template and the ~50 teravoxel FAFB EM volume https://www.cell.com/cell/abstract/S0092-8674(18)30787-6 … via automatic synapse detection by@neptunes5thmoon https://arxiv.org/pdf/1805.02718.pdf ….pic.twitter.com/SAYSMiDdHo
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And this is the recording of the CATMAID release 2018.07.19 demo talk with
@tomkazimiers:https://youtu.be/ikRlZBI0BToPrikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
New CATMAID release 2018.07.19 brings more volume intersection tools, 3D line width adj. on all platforms, better 3D catalog export, tracing data FOV constraints, more fine grained sampling options + more. Also it is the last version supporting Python 2.https://github.com/catmaid/CATMAID/releases/tag/2018.07.19 …
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CATMAID proslijedio/la je Tweet
Janelia scientists have imaged a complete adult fruit fly brain at nanoscale resolution, offering a new tool for researchers and uncovering new surprises.http://bit.ly/2Nt1i3K
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CATMAID proslijedio/la je Tweet
As
@zhihaozheng points out in response below, you absolutely can explore this awesome whole fly brain EM dataset from@dddavi and crew online in CATMAID thanks to work of@virtualflybrain (shout out to Rob Court@EdinburghUni) & image data hosted in Cambridge@MRC_LMB.https://twitter.com/PavelTomancak/status/1020388888861380609 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
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CATMAID proslijedio/la je Tweet
So lovely to see our colleagues working in the adult
#Drosophila brain being able to map and analyze their favorite neurons and circuits using our software@CATMAID. Here's hoping that the promised ventral nerve cord and complete CNS volumes will get imaged soon!https://twitter.com/MichaelBReiser/status/1019973499862077440 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
CATMAID proslijedio/la je Tweet
And, a preview of what the whole fly brain EM dataset's user community has been up to while we rewrote, etc. ~5 mm traced cable length shown here! beautiful visualization by
@uni_matrix, somewhat mangled by my downsizing & trimming to only 180° rotation#ASAPbio#bioRxivpic.twitter.com/kdIRe0fRHxHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
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New CATMAID release 2018.04.15 brings option to easily save window layouts & dependencies, H2N5 tile source, better landmark based transformations, more arrow shape + color options in graphs, faster neuron stats computation, mesh intersection tools + morehttps://github.com/catmaid/CATMAID/releases/tag/2018.04.15 …
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A new CATMAID version is available: 2017.12.07. Among other things it comes with a new landmark based transformation system, adjustable connector shapes, improved tracing data export and importer for non-empty instances and improved data retrieval speed:https://github.com/catmaid/CATMAID/releases/tag/2017.12.07 …
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CATMAID proslijedio/la je Tweet
The next release of
@catmaid will feature landmarks, which can be grouped and linked to locations in space. Ad hoc transformations can be created and used to transform skeletons into other landmark group spaces (yellow: original, pink: transformed virtual skeleton).#catmaidpic.twitter.com/xAM3bBppgB
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