Ben Langmead

@BenLangmead

Assoc. Prof. of Computer Science, Johns Hopkins University

Baltimore, MD
langmead-lab.org
Joined May 2011
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  1. Retweeted
    19 hours ago

    Excited to announce that I'm joining to work on open-source web apps for genomics! 🧬 💻

    9 replies 8 retweets 270 likes
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  2. Retweeted
    Jan 7

    Now that we are in 2022, I'd like to advertise again that I'm hiring a Staff Scientist I to work with my team at (includes team survey link) Come join us to work with and other projects =)

    25 retweets 26 likes
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  3. Retweeted
    Jan 7

    So stoked for our new website and twitter account for Streamline! Do you like tidy data? Want to learn about data as apis, how to make your data just work, and organizing memes? Follow !

    New year, new website!
    8 retweets 22 likes
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  4. Retweeted
    Jan 5

    I am very excited to post that together with Tomasz Kociumaka we propose the first dynamic suffix array with O(polylog(n))-time queries and updates! This is the first solution (30+ years after the discovery of suffix array) with all polylog(n) operations!

    6 replies 67 retweets 275 likes
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  5. Retweeted
    Jan 5

    is calling for and ! Submission deadline is Feb 18, 2022 for posters and Feb 19, 2022 for highlights. Details on and .

    5 retweets 10 likes
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  6. Retweeted
    Jan 5

    RECOMB-SEQ 2022 Call for Papers is live: . Submission deadline is 2/11. Workshop is May 20--21 in San Diego. See you there!

    16 retweets 19 likes
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  7. Retweeted
    Jan 4
    Replying to and

    We've used snaptron recently in a similar way and it was super easy and fast. Thanks to Gaddipati & for the useful resource

    1 reply 1 retweet 12 likes
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  8. Jan 4

    RECOMB-SEQ 2022 Call for Papers is live: . Workshop is May 20--21 in 🐳San🐳Diego🐳 prior to . Proceedings submission deadline is 2/11. Please promulgate, disseminate, and generally 📣spread 📢the 🔊word

    38 retweets 53 likes
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  9. Retweeted
    31 Dec 2021

    We've released a lightweight FM-index library (in C), for pattern matching in biological sequences. It's really fast, and provides both high level commands (count and locate) and fine-grained control of search steps to enable approximate match searching.

    3 replies 24 retweets 89 likes
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  10. 27 Dec 2021

    I hereby inform you that the formal name for the UK House of Lords is "The Right Honourable the Lords Spiritual and Temporal of the United Kingdom of Great Britain and Northern Ireland in Parliament assembled" (ref: )

    3 likes
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  11. Retweeted
    24 Dec 2021

    The University of Maryland, Baltimore County () Computer Science and Electrical Engineering department () invites applications for a full-time computer science lecturer position to begin in Fall 2022.

    3 retweets
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  12. Retweeted
    23 Dec 2021

    DA COOKIE MONSTER GIFT GUIDE FINALLY HERE! Use dis comprehensive list to find perfect last-minute gift for everyone on your list: 1. A cookie

    138 replies 3,891 retweets 16,233 likes
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  13. Retweeted
    21 Dec 2021

    We’ve just opened up a job req for positions on my team. Though there is just a single requisition, we will have several openings at different levels at multiple locations (San Diego, Cambridge UK and Singapore) over the coming year. Please RT.

    1 reply 39 retweets 48 likes
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  14. 20 Dec 2021

    It depends on how big the woodchuck is and whether the wood is wet

    1 reply 7 likes
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  15. Retweeted
    17 Dec 2021

    Postdocs in computational, evolutionary, and disease genetics: apply to be in the Rising Stars in Genetics and Genomics Symposium at the U of Utah (May 11-12). We want to host creative, early career scientists to share their exciting science.

    2 replies 47 retweets 59 likes
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  16. Retweeted
    16 Dec 2021

    This preprint describes our latest work on compacted DBG (cDBG) construction. Led by and in collaboration with Marek Kokot and . Here's an overview figure of the algorithm and a short 🧵1/7

    3 replies 26 retweets 54 likes
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  17. Retweeted
    16 Dec 2021

    We just got a consortium grant on parallel computing for pan- and metagenomics. Looks like I can hire a postdoc starting early next year. Just email me if you are interested to hear more about this opportunity.

    1 reply 35 retweets 66 likes
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  18. 14 Dec 2021

    The Snaptron service (normally at ), and therefore also the snapcount Bioconductor package, are temporarily disabled as we work through addressing possible log4j bug vulnerability (). We'll work fast as we can to get it back.

    1 reply 1 retweet 4 likes
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  19. Retweeted
    10 Dec 2021

    Check out our new preprint where we describe a new release of StringTie that uses a hybrid of long and short reads to improve transcriptome assembly

    1 reply 33 retweets 88 likes
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  20. Retweeted
    6 Dec 2021

    I am recruiting PhD students for Fall 2022! If you are interested in computational studies of antibody responses to human diseases (COVID-19, flu, HIV) and comparative immunogenomics of vertebrate species, consider sending your application via . Please RT!

    2 replies 52 retweets 78 likes
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