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Ben Raphael proslijedio/la je Tweet
Are you interested in oncogenic transposons, chromatin, and DNA nucleases? We are looking for ambitious post-doctoral research fellows: please join us! https://www.nature.com/naturecareers/job/postdoctoral-research-fellow-in-cancer-transposon-biology-memorial-sloan-kettering-cancer-center-mskcc-718822 … It's an exciting project!https://vimeo.com/336681231
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Ben Raphael proslijedio/la je Tweet
February is here! Submit your work to our computational cancer biology meeting at
@recomb2020 by the Feb 17 deadline. Full details on call for papers and abstracts here: https://www.recomb2020.org/recomb-ccb https://twitter.com/hajirasouliha/status/1215615460173062144 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Ben Raphael proslijedio/la je Tweet
Last year I did this together with
@XShirleyLiu. I wanted to share my struggles, so that other young females struggling with raising a family and having an academic career know they are not alone. We just have to tell yourself that we are doing our best and that is good enough.https://twitter.com/XShirleyLiu/status/1221797175530835969 …Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Ben Raphael proslijedio/la je Tweet
New paper on the role of phenotypic switching in cancer drug resistance: https://arxiv.org/abs/2001.07690
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And for background on the ancient problem of subnetwork identification (from 2002! check out this classic from
@TreyIdekerhttps://academic.oup.com/bioinformatics/article/18/suppl_1/S233/232152 …Prikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Main focus of paper is statistical issue of bias in maximum likelihood estimator of subnetwork; thus, we don't consign equations to supplement. However, also a practical algorithm, ready for analysis of network data https://github.com/raphael-group/netmix …
@recomb2020#methodsmatterPrikaži ovu nitHvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
A preprint of our
#recomb2020 paper presenting NetMix, a new take on ancient problem (in bioinformatics timescale) of identifying altered subnetworks. With Matt Reyna,@UthsavC, and Rebecca Elyanow.@recomb2020 https://doi.org/10.1101/2020.01.18.911438 …pic.twitter.com/HcFUjXdAn5
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Ben Raphael proslijedio/la je Tweet
Only, one week left until the RECOMB-Seq 2020 paper submission deadline (Jan. 20): https://www.recomb2020.org/recomb-seq-satellites … !
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Ben Raphael proslijedio/la je Tweet
Very excited that our paper on comparison of 2 Illumina platforms: HiSeqX & NovaSeq on 3 deeply whole-genome sequenced tumor & matched normal cell lines is now available in
@SciReports! With@mjs2225@notSoJunkDNA and others@nygenomehttps://www.nature.com/articles/s41598-019-55636-3 …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Ben Raphael proslijedio/la je Tweet
Very happy to see our latest paper "Systematic analysis of alterations in the ubiquitin proteolysis system in Cancer" freely accessible at
@NatureCancer. By@fran_mj88,@fmuinos,@erika_loar and Abel Gonzalez-Perez https://www.nature.com/articles/s43018-019-0001-2 …pic.twitter.com/G0VzJSuE8g
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Building phylogenetic trees from single-cell sequencing data? Our new algorithm SCARLET by
@grytesatas@ZaccaSimo builds phylogenies using both single-nucleotide mutations and copy number aberrations, accounting for mutation loss from deletions https://www.biorxiv.org/content/10.1101/840355v1 …pic.twitter.com/53hQyCCAln
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Before naming our HotNet algorithm for cancer mutation network analysis in 2011, did a quick web search for conflicting names, and discovered HotNets. Thought not much overlap...until today.
#hotnets2019 is in my building!@vandinfa https://www.liebertpub.com/doi/full/10.1089/cmb.2010.0265 …pic.twitter.com/HVMi8U3Yoi
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Ben Raphael proslijedio/la je Tweet
Happy to announce a great partnership with
@lifebitAI - Lifebit and Medley Genomics Partner to Deliver Streamlined Solution Supporting New Diagnostic and Therapeutic Discoverieshttps://blog.lifebit.ai/2019/11/14/lifebit-and-medley-genomics-partner-to-deliver-streamlined-solution-supporting-new-diagnostic-and-therapeutic-discoveries/ …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Ben Raphael proslijedio/la je Tweet
Finally, our first paper on colorectal cancer phylogeography is out; here we tried to port techniques from evolutionary biology to describe cancer spread in a quantitative manner: https://nature.com/articles/s41467-019-12926-8 …pic.twitter.com/Cmn2D5frlF
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Ben Raphael proslijedio/la je Tweet
Evidence of convergent evolution and potential precursors of Whole Genome Dups revealed in allele- and haplotype-specific copy number landscape of two breast cancer genomes at single-cell resolution with CHISEL https://biorxiv.org/content/10.1101/837195v1 … from
@ZaccaSimo and@benjraphaelpic.twitter.com/E8HQpkwoD0
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Allele-specific copy number aberrations in single-cell DNA sequencing data with CHISEL by
@ZaccaSimo. Tumor evolution starts from a *diploid* human genome. Ready for your@10xGenomics CNV or DLP data! https://www.biorxiv.org/content/10.1101/837195v1 …pic.twitter.com/ziXCy7JMGS
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Looking forward to reading this! Saw multiple previews from
@skimomiks during my stay at@nygenome, building anticipationhttps://twitter.com/skimomiks/status/1193604304378179585 …
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Giving my first-ever webinar Oct 15 9am PST to present CHISEL, our new method for single-cell DNA copy number using
@10xGenomics CNV Solution @ZaccoSimo https://pages.10xgenomics.com/wbr-2019-10-15-event-ra_c-global-ben-raphael.html …Hvala. Twitter će to iskoristiti za poboljšanje vaše vremenske crte. PoništiPoništi -
Ben Raphael proslijedio/la je Tweet
Congratulations to the authors of this years accepted papers for the RECOMB-CBB satellite conference! Please find the full list here: https://recombccb.recomb2019.org/program/
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Ben Raphael proslijedio/la je Tweet
The RECOMB-Seq program is now available online! Check it out at https://recombseq.recomb2019.org/program/ .
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