Ben Raphael

@benjraphael

Professor of Computer Science, Princeton University

Vrijeme pridruživanja: ožujak 2014.

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  1. proslijedio/la je Tweet
    2. velj

    Are you interested in oncogenic transposons, chromatin, and DNA nucleases? We are looking for ambitious post-doctoral research fellows: please join us! It's an exciting project!

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  2. proslijedio/la je Tweet
    1. velj

    February is here! Submit your work to our computational cancer biology meeting at by the Feb 17 deadline. Full details on call for papers and abstracts here:

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  3. proslijedio/la je Tweet
    27. sij

    Last year I did this together with . I wanted to share my struggles, so that other young females struggling with raising a family and having an academic career know they are not alone. We just have to tell yourself that we are doing our best and that is good enough.

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  4. proslijedio/la je Tweet
    22. sij

    New paper on the role of phenotypic switching in cancer drug resistance:

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  5. 21. sij

    And for background on the ancient problem of subnetwork identification (from 2002! check out this classic from

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  6. 21. sij

    Main focus of paper is statistical issue of bias in maximum likelihood estimator of subnetwork; thus, we don't consign equations to supplement. However, also a practical algorithm, ready for analysis of network data

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  7. 21. sij

    A preprint of our paper presenting NetMix, a new take on ancient problem (in bioinformatics timescale) of identifying altered subnetworks. With Matt Reyna, , and Rebecca Elyanow.

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    13. sij

    Only, one week left until the RECOMB-Seq 2020 paper submission deadline (Jan. 20): !

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  9. proslijedio/la je Tweet
    13. pro 2019.

    Very excited that our paper on comparison of 2 Illumina platforms: HiSeqX & NovaSeq on 3 deeply whole-genome sequenced tumor & matched normal cell lines is now available in ! With and others

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  10. proslijedio/la je Tweet
    3. pro 2019.

    Very happy to see our latest paper "Systematic analysis of alterations in the ubiquitin proteolysis system in Cancer" freely accessible at . By , , and Abel Gonzalez-Perez

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  11. 27. stu 2019.

    Building phylogenetic trees from single-cell sequencing data? Our new algorithm SCARLET by builds phylogenies using both single-nucleotide mutations and copy number aberrations, accounting for mutation loss from deletions

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  12. 14. stu 2019.

    Before naming our HotNet algorithm for cancer mutation network analysis in 2011, did a quick web search for conflicting names, and discovered HotNets. Thought not much overlap...until today. is in my building!

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    14. stu 2019.

    Happy to announce a great partnership with - Lifebit and Medley Genomics Partner to Deliver Streamlined Solution Supporting New Diagnostic and Therapeutic Discoveries

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  14. proslijedio/la je Tweet
    13. stu 2019.

    Finally, our first paper on colorectal cancer phylogeography is out; here we tried to port techniques from evolutionary biology to describe cancer spread in a quantitative manner:

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  15. proslijedio/la je Tweet
    11. stu 2019.

    Evidence of convergent evolution and potential precursors of Whole Genome Dups revealed in allele- and haplotype-specific copy number landscape of two breast cancer genomes at single-cell resolution with CHISEL from and

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  16. 11. stu 2019.

    Allele-specific copy number aberrations in single-cell DNA sequencing data with CHISEL by . Tumor evolution starts from a *diploid* human genome. Ready for your CNV or DLP data!

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  17. 11. stu 2019.

    Looking forward to reading this! Saw multiple previews from during my stay at , building anticipation

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  18. 11. lis 2019.

    Giving my first-ever webinar Oct 15 9am PST to present CHISEL, our new method for single-cell DNA copy number using CNV Solution @ZaccoSimo

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  19. proslijedio/la je Tweet
    20. ožu 2019.

    Congratulations to the authors of this years accepted papers for the RECOMB-CBB satellite conference! Please find the full list here:

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  20. proslijedio/la je Tweet
    15. ožu 2019.

    The RECOMB-Seq program is now available online! Check it out at .

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