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RT mike_schatz "Kevin_McKernan samkovaka timp0 nanopore Yes, coverage over target region has little to no bias and follows a Poisson distribution exactly as expected. pic.twitter.com/vDGmScxBpI"
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RT mike_schatz ".nanopore's write up on how adaptive sequencing works by controlling pore voltages in real time. Amazing that we can have so much control over individual molecules of DNA! https://nanoporetech.com/about-us/news/towards-real-time-targeting-enrichment-or-other-sampling-nanopore-sequencing-devices … samkovaka mattloose timp0 alexomics
#Star… pic.twitter.com/vNOvKkBuD6"
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RT mike_schatz "samkovaka timp0 nanopore With it we show how you can reach 30x coverage of a 148 gene cancer panel on a single MinION run to yield SV calling 100% concordant to deep coverage ONT or HiFi reads. Crucially, we find twice the number of S… pic.twitter.com/UAtxghTq4S"
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RT mike_schatz "RT segal_eran: New perspective I wrote for nature where I argue that cohorts with rich molecular and physiological data may allow to prioritize human-relevant targets for drug development In some cases may allow to skip animal testing… pic.twitter.com/qARQ5l7OMa"
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RT mike_schatz "melanie_kirsche tim_kraska JeffDean It is a classic CS space-time tradeoff, and with a tiny amount of space overhead (0.1%) we can double the performance over TheGeneMyers' optimal suffix array search algorithm. If we allow for more s… pic.twitter.com/qqUFgHBpdq"
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RT mike_schatz "BioMickWatson melanie_kirsche This was with 21-mers but is robust except if you use very short kmers. The function also becomes more complicated if you really skew the GC content but you have to go beyond anything that exists in nature pic.twitter.com/M5VGhIHVkA"
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RT mike_schatz "melanie_kirsche Real genomes are shockingly predictable with respect to the ordering of k-mers/suffixes pic.twitter.com/vc7zsDwXRy"
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RT mike_schatz "Introducing Sapling: Accelerating Suffix Array Queries with Learned Data Models with melanie_kirsche and http://arundas.org . https://www.biorxiv.org/content/10.1101/2020.01.29.925768v1 … pic.twitter.com/FmK8oOBHEg"
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RT mike_schatz "RT theNASciences: Congratulations Zachary B. Lippman of CSHLCareers HHMINEWS, recipient of the NAS Prize in Food and Agriculture Sciences! His work, which aims to improve crop production, helps to address the challenges of population … pic.twitter.com/1oNQauUyqy"
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RT mike_schatz "RT marianattestad: Ribbon (http://genomeribbon.com ) now officially uses WebAssembly-compiled samtools for reading local bam files! Thanks to RobAboukhalil! pic.twitter.com/JlvOrslY0E"
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RT mike_schatz "RT NCIDataSci: Join the next NCIResearchCtr seminar, “Marshaling Public Data for Lean and Powerful Splicing Studies.” BenLangmead of JohnsHopkins will describe how his team is making large public RNA sequencing datasets easy to use. J… pic.twitter.com/0ypmG83Wqd"
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RT mike_schatz "RT jessfanzo: Are non-communicable diseases (NCDs) communicable? An interesting paper in sciencemagazine suggests that NCDs could have a microbial component and if so, might be communicable via the microbiota. Wowsa. … pic.twitter.com/yZecl5WvxP"
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RT mike_schatz "RT JuliaEales: Zach Lippman: long-read nanopore sequencing on PromethION revealed 240k SVs across 100 tomato genomes
#PAGXXVIII pic.twitter.com/ACsjVrBLRr"
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RT mike_schatz "Don’t miss!!!! Structural Variant Landscapes in Plant Genomes and their Impact on Evolution, Domestication, and Breeding present by Zach Lippman. Starting in one hour!
#PAGXXVIII#PAG2020 pic.twitter.com/HdMLPF47Qx"
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RT mike_schatz "Bar is open for the PhaseGenomics session. Looking forward to the great talks!
#PAGXXVIII pic.twitter.com/N0KQpz145h"
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RT mike_schatz "Interested in population-scale SV analysis with nanopore long reads? Check out poster 860 by malonge11 et al.
#PAGXXVII pic.twitter.com/07KwxuPA0m"
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RT mike_schatz "RT obigriffith: Now accepting applicants for our Advanced Sequencing Technologies & Bioinformatics Analysis course CSHL. This intensive 2wk course led by AACRPres Elaine Mardis, Dick McCombie, aaronquinlan, malachigriffith and I explo… pic.twitter.com/ex0FUNHyhW"
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RT mike_schatz "RT HiTSeq: Keynote Speakers for
#hitseq2020 are now confirmed. Looking forward to hear from hagentilgner, khmiga, and mike_schatz ! pic.twitter.com/ZdkAXQiZHK"
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RT mike_schatz "RT BMCBiology: Improving Anopheles genomes: rmwaterhouse igorshar& co present upgraded genome assemblies of 21 Anopheles species using an evolutionarily guided, three-method scaffolding workflow https://bit.ly/2ue2fJ3 aphillippy maxal6 … pic.twitter.com/oXKcoBHLVu"
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